面向TOMCAT实时层析成像的动态数据后处理

IF 3.56 Q1 Medicine
Federica Marone, Alain Studer, Heiner Billich, Leonardo Sala, Marco Stampanoni
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引用次数: 58

摘要

第三代同步加速器源的亚秒全场层析显微镜已经成为现实,为不同领域动态系统的研究开辟了新的可能性。在衍射受限的存储环上,层析成像实验中持续提高的数GB/s数据速率将变得更加普遍,很快就会投入使用。原始层析投影后处理所需的计算工具通常没有经历与实验设施相同的效率提高,阻碍了对这一新潜力的最佳开发。我们在这里提出了一个快速、灵活和用户友好的后处理管道,克服了这种效率不匹配,并在获取数据后几秒钟内提供重建的层析数据集,实现了快速的参数和图像质量评估以及tb层析数据的高效后处理。有了这个新工具,也能够直接接受来自检测器的数据流,在不到半秒的时间内就可以获得一些选定的层析切片,提供先进的预览功能,为动态实验的动态控制的新概念铺平了道路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT

Towards on-the-fly data post-processing for real-time tomographic imaging at TOMCAT

Sub-second full-field tomographic microscopy at third-generation synchrotron sources is a reality, opening up new possibilities for the study of dynamic systems in different fields. Sustained elevated data rates of multiple GB/s in tomographic experiments will become even more common at diffraction-limited storage rings, coming in operation soon. The computational tools necessary for the post-processing of raw tomographic projections have generally not experienced the same efficiency increase as the experimental facilities, hindering optimal exploitation of this new potential. We present here a fast, flexible, and user-friendly post-processing pipeline overcoming this efficiency mismatch and delivering reconstructed tomographic datasets just few seconds after the data have been acquired, enabling fast parameter and image quality evaluation as well as efficient post-processing of TBs of tomographic data. With this new tool, also able to accept a stream of data directly from a detector, few selected tomographic slices are available in less than half a second, providing advanced previewing capabilities paving the way to new concepts for on-the-fly control of dynamic experiments.

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来源期刊
Advanced Structural and Chemical Imaging
Advanced Structural and Chemical Imaging Medicine-Radiology, Nuclear Medicine and Imaging
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