用交叉相关自旋弛豫检测无序蛋白质中的各向异性节段动力学

Q3 Physics and Astronomy
Magnetic resonance (Gottingen, Germany) Pub Date : 2021-07-06 eCollection Date: 2021-01-01 DOI:10.5194/mr-2-557-2021
Clemens Kauffmann, Irene Ceccolini, Georg Kontaxis, Robert Konrat
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引用次数: 0

摘要

摘要在Geoffrey Bodenhausen对核磁共振波谱学的众多贡献中,他在自旋弛豫方法和理论领域的发展必将产生深远的影响。从他对多量子相干激发的开创性贡献开始,他和他的团队彻底研究了这些“禁果”的复杂弛豫特性,并开发了实验技术,以揭示以前基本上被忽视的交叉相关弛豫(CCR)效应的相关性,因为“本质是肉眼看不见的”。在这里,我们在具有挑战性的内在无序蛋白(IDPs)背景下考虑CCR,并强调其在未来几年内在无序蛋白结构动力学研究中的潜力和相关性。通常,球形折叠蛋白质的动力学被建模和理解为与溶液中翻滚的刚性结构的偏差。然而,随着蛋白质灵活性的增加,正如在IDPs中观察到的那样,结构和动力学之间的这种明显的二分法变得模糊。虽然复杂的动力学和集合平均可能会进一步损害机械细节的提取,但自旋弛豫独特地编码了蛋白质的结构记忆。由于重要的方法发展,如高维非均匀采样技术,现在可以以前所未有的分辨率监测IDPs中的自旋弛豫。传统的15N自旋探针没有嵌入刚性的球状褶皱中,可能不足以捕捉IDP动力学固有的局部性质。为了更好地描述和理解IDPs可能的节段运动,我们提出了一种通过量化单个15N1HN和13C ' 13Cα自旋对的交叉相关自旋弛豫来检测各向异性节段动力学特征的实验方法。通过采用Geoffrey Bodenhausen的对称重转换原理来获得零频谱密度值,我们可以定义和证明更敏感的方法来表征IDPs的各向异性动力学。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Detecting anisotropic segmental dynamics in disordered proteins by cross-correlated spin relaxation.

Detecting anisotropic segmental dynamics in disordered proteins by cross-correlated spin relaxation.

Detecting anisotropic segmental dynamics in disordered proteins by cross-correlated spin relaxation.

Detecting anisotropic segmental dynamics in disordered proteins by cross-correlated spin relaxation.

Among the numerous contributions of Geoffrey Bodenhausen to NMR spectroscopy, his developments in the field of spin-relaxation methodology and theory will definitely have a long lasting impact. Starting with his seminal contributions to the excitation of multiple-quantum coherences, he and his group thoroughly investigated the intricate relaxation properties of these "forbidden fruits" and developed experimental techniques to reveal the relevance of previously largely ignored cross-correlated relaxation (CCR) effects, as "the essential is invisible to the eyes". Here we consider CCR within the challenging context of intrinsically disordered proteins (IDPs) and emphasize its potential and relevance for the studies of structural dynamics of IDPs in the future years to come. Conventionally, dynamics of globularly folded proteins are modeled and understood as deviations from otherwise rigid structures tumbling in solution. However, with increasing protein flexibility, as observed for IDPs, this apparent dichotomy between structure and dynamics becomes blurred. Although complex dynamics and ensemble averaging might impair the extraction of mechanistic details even further, spin relaxation uniquely encodes a protein's structural memory. Due to significant methodological developments, such as high-dimensional non-uniform sampling techniques, spin relaxation in IDPs can now be monitored in unprecedented resolution. Not embedded within a rigid globular fold, conventional 15N spin probes might not suffice to capture the inherently local nature of IDP dynamics. To better describe and understand possible segmental motions of IDPs, we propose an experimental approach to detect the signature of anisotropic segmental dynamics by quantifying cross-correlated spin relaxation of individual 15N1HN and 13C'13Cα spin pairs. By adapting Geoffrey Bodenhausen's symmetrical reconversion principle to obtain zero frequency spectral density values, we can define and demonstrate more sensitive means to characterize anisotropic dynamics in IDPs.

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