扫描透射电子显微镜快速图像模拟算法

IF 3.56 Q1 Medicine
Colin Ophus
{"title":"扫描透射电子显微镜快速图像模拟算法","authors":"Colin Ophus","doi":"10.1186/s40679-017-0046-1","DOIUrl":null,"url":null,"abstract":"<p>Image simulation for scanning transmission electron microscopy at atomic resolution for samples with realistic dimensions can require very large computation times using existing simulation algorithms. We present a new algorithm named PRISM that combines features of the two most commonly used algorithms, namely the Bloch wave and multislice methods. PRISM uses a Fourier interpolation factor <i>f</i> that has typical values of 4–20 for atomic resolution simulations. We show that in many cases PRISM can provide a speedup that scales with <i>f</i>\n <sup>4</sup> compared to multislice simulations, with a negligible loss of accuracy. We demonstrate the usefulness of this method with large-scale scanning transmission electron microscopy image simulations of a crystalline nanoparticle on an amorphous carbon substrate.</p>","PeriodicalId":460,"journal":{"name":"Advanced Structural and Chemical Imaging","volume":"3 1","pages":""},"PeriodicalIF":3.5600,"publicationDate":"2017-05-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40679-017-0046-1","citationCount":"128","resultStr":"{\"title\":\"A fast image simulation algorithm for scanning transmission electron microscopy\",\"authors\":\"Colin Ophus\",\"doi\":\"10.1186/s40679-017-0046-1\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Image simulation for scanning transmission electron microscopy at atomic resolution for samples with realistic dimensions can require very large computation times using existing simulation algorithms. We present a new algorithm named PRISM that combines features of the two most commonly used algorithms, namely the Bloch wave and multislice methods. PRISM uses a Fourier interpolation factor <i>f</i> that has typical values of 4–20 for atomic resolution simulations. We show that in many cases PRISM can provide a speedup that scales with <i>f</i>\\n <sup>4</sup> compared to multislice simulations, with a negligible loss of accuracy. We demonstrate the usefulness of this method with large-scale scanning transmission electron microscopy image simulations of a crystalline nanoparticle on an amorphous carbon substrate.</p>\",\"PeriodicalId\":460,\"journal\":{\"name\":\"Advanced Structural and Chemical Imaging\",\"volume\":\"3 1\",\"pages\":\"\"},\"PeriodicalIF\":3.5600,\"publicationDate\":\"2017-05-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1186/s40679-017-0046-1\",\"citationCount\":\"128\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Advanced Structural and Chemical Imaging\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://link.springer.com/article/10.1186/s40679-017-0046-1\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Medicine\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advanced Structural and Chemical Imaging","FirstCategoryId":"1085","ListUrlMain":"https://link.springer.com/article/10.1186/s40679-017-0046-1","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Medicine","Score":null,"Total":0}
引用次数: 128

摘要

使用现有的模拟算法,在原子分辨率下对具有真实尺寸的样品进行扫描透射电子显微镜图像模拟需要非常大的计算时间。我们提出了一种新的PRISM算法,它结合了两种最常用的算法,即Bloch波和多切片方法的特点。PRISM使用傅立叶插值因子f,其典型值为4-20,用于原子分辨率模拟。我们表明,在许多情况下,与多片模拟相比,PRISM可以提供f4的加速,而精度损失可以忽略不计。我们通过在非晶碳衬底上的晶体纳米颗粒的大规模扫描透射电子显微镜图像模拟证明了这种方法的实用性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A fast image simulation algorithm for scanning transmission electron microscopy

A fast image simulation algorithm for scanning transmission electron microscopy

Image simulation for scanning transmission electron microscopy at atomic resolution for samples with realistic dimensions can require very large computation times using existing simulation algorithms. We present a new algorithm named PRISM that combines features of the two most commonly used algorithms, namely the Bloch wave and multislice methods. PRISM uses a Fourier interpolation factor f that has typical values of 4–20 for atomic resolution simulations. We show that in many cases PRISM can provide a speedup that scales with f 4 compared to multislice simulations, with a negligible loss of accuracy. We demonstrate the usefulness of this method with large-scale scanning transmission electron microscopy image simulations of a crystalline nanoparticle on an amorphous carbon substrate.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Advanced Structural and Chemical Imaging
Advanced Structural and Chemical Imaging Medicine-Radiology, Nuclear Medicine and Imaging
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信