新冠肺炎时间序列预测的可解释多通道模型

IF 2.4 3区 生物学 Q3 BIOCHEMICAL RESEARCH METHODS
Hongjiang He, Jiang Xie, Xinwei Lu, Dingkai Huang, Wenjun Zhang
{"title":"新冠肺炎时间序列预测的可解释多通道模型","authors":"Hongjiang He, Jiang Xie, Xinwei Lu, Dingkai Huang, Wenjun Zhang","doi":"10.2174/1574893618666230727160507","DOIUrl":null,"url":null,"abstract":"\n\nThe COVID-19 pandemic has affected every country and changed people's lives. Accurate prediction of COVID-19 trends can help prevent the further spread of the outbreak. However, the changing environment affects the COVID-19 prediction performance, and previous models are limited in practical applications.\n\n\n\nAn explainable multichannel deep learning model with spatial, temporal and environmental channels for time series prediction, STE-COVIDNet, was proposed. The time series data of COVID-19 infection, weather, in-state population mobility, and vaccination were collected from May, 2020, to October, 2021, in the USA. In the environmental channel of STE-COVIDNet, an attention mechanism was applied to extract significant environmental factors related to the spread of COVID-19. In addition, the attention weights of these factors were analyzed with the actual situation.\n\n\n\nSTE-COVIDNet was found to be superior to other advanced prediction models of COVID-19 infection cases. The analysis results of attention weight were reported to be consistent with existing studies and reports. It was found that the same environmental factors that influence the spread of COVID-19 can vary across time and region, which explains why findings of previous studies on the relationship between the environment and COVID-19 vary by region and time.\n\n\n\nSTE-COVIDNet is an explainable model that can adapt to environmental changes and thus improve predictive performance.\n","PeriodicalId":10801,"journal":{"name":"Current Bioinformatics","volume":" ","pages":""},"PeriodicalIF":2.4000,"publicationDate":"2023-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An Explainable Multichannel Model for COVID-19 Time Series Prediction\",\"authors\":\"Hongjiang He, Jiang Xie, Xinwei Lu, Dingkai Huang, Wenjun Zhang\",\"doi\":\"10.2174/1574893618666230727160507\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"\\n\\nThe COVID-19 pandemic has affected every country and changed people's lives. Accurate prediction of COVID-19 trends can help prevent the further spread of the outbreak. However, the changing environment affects the COVID-19 prediction performance, and previous models are limited in practical applications.\\n\\n\\n\\nAn explainable multichannel deep learning model with spatial, temporal and environmental channels for time series prediction, STE-COVIDNet, was proposed. The time series data of COVID-19 infection, weather, in-state population mobility, and vaccination were collected from May, 2020, to October, 2021, in the USA. In the environmental channel of STE-COVIDNet, an attention mechanism was applied to extract significant environmental factors related to the spread of COVID-19. In addition, the attention weights of these factors were analyzed with the actual situation.\\n\\n\\n\\nSTE-COVIDNet was found to be superior to other advanced prediction models of COVID-19 infection cases. The analysis results of attention weight were reported to be consistent with existing studies and reports. It was found that the same environmental factors that influence the spread of COVID-19 can vary across time and region, which explains why findings of previous studies on the relationship between the environment and COVID-19 vary by region and time.\\n\\n\\n\\nSTE-COVIDNet is an explainable model that can adapt to environmental changes and thus improve predictive performance.\\n\",\"PeriodicalId\":10801,\"journal\":{\"name\":\"Current Bioinformatics\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":2.4000,\"publicationDate\":\"2023-07-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Current Bioinformatics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.2174/1574893618666230727160507\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Current Bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.2174/1574893618666230727160507","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

摘要

新冠肺炎疫情影响到每个国家,改变了人们的生活。准确预测COVID-19趋势有助于防止疫情进一步蔓延。然而,环境的变化会影响COVID-19的预测性能,并且先前的模型在实际应用中受到限制。提出了一种具有空间、时间和环境通道的可解释多通道深度学习模型STE-COVIDNet。收集2020年5月至2021年10月美国COVID-19感染、天气、州内人口流动和疫苗接种的时间序列数据。在ste - covid - net环境通道中,应用关注机制提取与COVID-19传播相关的显著环境因素。并结合实际情况对各因素的关注权重进行了分析。STE-COVIDNet模型优于其他先进的COVID-19感染病例预测模型。注意权重的分析结果与已有的研究报告一致。研究发现,影响新冠病毒传播的相同环境因素可能在不同的时间和地区有所不同,这也解释了为什么以往关于环境与新冠病毒之间关系的研究结果在不同的地区和时间有所不同。ste - covid - net是一个可解释的模型,可以适应环境变化,从而提高预测性能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An Explainable Multichannel Model for COVID-19 Time Series Prediction
The COVID-19 pandemic has affected every country and changed people's lives. Accurate prediction of COVID-19 trends can help prevent the further spread of the outbreak. However, the changing environment affects the COVID-19 prediction performance, and previous models are limited in practical applications. An explainable multichannel deep learning model with spatial, temporal and environmental channels for time series prediction, STE-COVIDNet, was proposed. The time series data of COVID-19 infection, weather, in-state population mobility, and vaccination were collected from May, 2020, to October, 2021, in the USA. In the environmental channel of STE-COVIDNet, an attention mechanism was applied to extract significant environmental factors related to the spread of COVID-19. In addition, the attention weights of these factors were analyzed with the actual situation. STE-COVIDNet was found to be superior to other advanced prediction models of COVID-19 infection cases. The analysis results of attention weight were reported to be consistent with existing studies and reports. It was found that the same environmental factors that influence the spread of COVID-19 can vary across time and region, which explains why findings of previous studies on the relationship between the environment and COVID-19 vary by region and time. STE-COVIDNet is an explainable model that can adapt to environmental changes and thus improve predictive performance.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Current Bioinformatics
Current Bioinformatics 生物-生化研究方法
CiteScore
6.60
自引率
2.50%
发文量
77
审稿时长
>12 weeks
期刊介绍: Current Bioinformatics aims to publish all the latest and outstanding developments in bioinformatics. Each issue contains a series of timely, in-depth/mini-reviews, research papers and guest edited thematic issues written by leaders in the field, covering a wide range of the integration of biology with computer and information science. The journal focuses on advances in computational molecular/structural biology, encompassing areas such as computing in biomedicine and genomics, computational proteomics and systems biology, and metabolic pathway engineering. Developments in these fields have direct implications on key issues related to health care, medicine, genetic disorders, development of agricultural products, renewable energy, environmental protection, etc.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信