Rachel Collin, Maycol Madrid, Dagoberto E. Venera-Pontón, Kenneth S. Macdonald, Alexandra De León, Dubravka Vrdoljak, Michael J. Boyle, Peter Bryant, Tim Arehart, Amy C. Driskell
{"title":"热带东太平洋异足类腹足动物的多样性和遗传连通性","authors":"Rachel Collin, Maycol Madrid, Dagoberto E. Venera-Pontón, Kenneth S. Macdonald, Alexandra De León, Dubravka Vrdoljak, Michael J. Boyle, Peter Bryant, Tim Arehart, Amy C. Driskell","doi":"10.1111/ivb.12395","DOIUrl":null,"url":null,"abstract":"<p>Previous research focusing on pelagic gastropods in the open ocean has demonstrated that many morphospecies comprise multiple distinct clades or cryptic species that can be distinguished with DNA sequence data. To date, the genetic diversity of the pelagic gastropod fauna of the tropical East Pacific, especially in shallow coastal waters, remains largely unexplored. To document the diversity of pterotracheoids (formerly heteropods) from the coastal waters of the Bay of Panama, we collected, photographed and sequenced fragments of mitochondrial <i>cytochrome c oxidase subunit I</i> (<i>COI</i>) and <i>16S</i> ribosomal DNA for 60 atlantids, 3 carinariids and 6 pterotracheids. In addition to the <i>COI</i> barcode, our results include the first published <i>16S</i> sequences for these groups. We found 11 operational taxonomic units (OTUs): 9 in the genus <i>Atlanta</i>, 1 <i>Carinaria</i> and 1 <i>Firoloida</i>. We report the presence of <i>Atlanta oligogyra</i> (Clades A and B), <i>Atlanta turriculata</i>, <i>Atlanta lesueurii</i>, <i>Atlanta helicinoidea</i> (Clade B), <i>Atlanta plana</i>, <i>Atlanta echinogyra</i>, <i>Atlanta inflata</i> and <i>Atlanta frontieri</i> through comparisons of our sequences with previously published sequences. We did not find <i>Atlanta gaudichaudi</i>, <i>Atlanta inclinata</i>, <i>Atlanta tokiokai</i>, <i>Atlanta gibbosa</i>, <i>Atlanta peronii</i>, or <i>Oxygyrus inflatus</i>, which have previously been reported from the region. Haplotype networks and estimates of Φ<sub>ST</sub> illustrate how some species show population differentiation across the tropical Indo-Pacific region, whereas others show little apparent population structure. For example, the most common haplotypes of <i>A</i>. <i>inflata</i> and of <i>A</i>. <i>turriculata</i> occur in the Indian Ocean, the Central and West Pacific and the tropical East Pacific, whereas individuals of <i>A</i>. <i>frontieri</i> from the Indian Ocean do not share haplotypes with individuals of <i>A</i>. <i>frontieri</i> from the Pacific Ocean. Analyses were limited by sample sizes, but these data suggest that population genetics approaches may be useful for reconstructing population histories of these important, but overlooked, components of the plankton.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2023-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Diversity and genetic connectivity of heteropod (Pterotracheoidea) gastropods in the Tropical Eastern Pacific\",\"authors\":\"Rachel Collin, Maycol Madrid, Dagoberto E. Venera-Pontón, Kenneth S. Macdonald, Alexandra De León, Dubravka Vrdoljak, Michael J. Boyle, Peter Bryant, Tim Arehart, Amy C. Driskell\",\"doi\":\"10.1111/ivb.12395\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Previous research focusing on pelagic gastropods in the open ocean has demonstrated that many morphospecies comprise multiple distinct clades or cryptic species that can be distinguished with DNA sequence data. To date, the genetic diversity of the pelagic gastropod fauna of the tropical East Pacific, especially in shallow coastal waters, remains largely unexplored. To document the diversity of pterotracheoids (formerly heteropods) from the coastal waters of the Bay of Panama, we collected, photographed and sequenced fragments of mitochondrial <i>cytochrome c oxidase subunit I</i> (<i>COI</i>) and <i>16S</i> ribosomal DNA for 60 atlantids, 3 carinariids and 6 pterotracheids. In addition to the <i>COI</i> barcode, our results include the first published <i>16S</i> sequences for these groups. We found 11 operational taxonomic units (OTUs): 9 in the genus <i>Atlanta</i>, 1 <i>Carinaria</i> and 1 <i>Firoloida</i>. We report the presence of <i>Atlanta oligogyra</i> (Clades A and B), <i>Atlanta turriculata</i>, <i>Atlanta lesueurii</i>, <i>Atlanta helicinoidea</i> (Clade B), <i>Atlanta plana</i>, <i>Atlanta echinogyra</i>, <i>Atlanta inflata</i> and <i>Atlanta frontieri</i> through comparisons of our sequences with previously published sequences. We did not find <i>Atlanta gaudichaudi</i>, <i>Atlanta inclinata</i>, <i>Atlanta tokiokai</i>, <i>Atlanta gibbosa</i>, <i>Atlanta peronii</i>, or <i>Oxygyrus inflatus</i>, which have previously been reported from the region. Haplotype networks and estimates of Φ<sub>ST</sub> illustrate how some species show population differentiation across the tropical Indo-Pacific region, whereas others show little apparent population structure. For example, the most common haplotypes of <i>A</i>. <i>inflata</i> and of <i>A</i>. <i>turriculata</i> occur in the Indian Ocean, the Central and West Pacific and the tropical East Pacific, whereas individuals of <i>A</i>. <i>frontieri</i> from the Indian Ocean do not share haplotypes with individuals of <i>A</i>. <i>frontieri</i> from the Pacific Ocean. Analyses were limited by sample sizes, but these data suggest that population genetics approaches may be useful for reconstructing population histories of these important, but overlooked, components of the plankton.</p>\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2023-03-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/ivb.12395\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/ivb.12395","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Diversity and genetic connectivity of heteropod (Pterotracheoidea) gastropods in the Tropical Eastern Pacific
Previous research focusing on pelagic gastropods in the open ocean has demonstrated that many morphospecies comprise multiple distinct clades or cryptic species that can be distinguished with DNA sequence data. To date, the genetic diversity of the pelagic gastropod fauna of the tropical East Pacific, especially in shallow coastal waters, remains largely unexplored. To document the diversity of pterotracheoids (formerly heteropods) from the coastal waters of the Bay of Panama, we collected, photographed and sequenced fragments of mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA for 60 atlantids, 3 carinariids and 6 pterotracheids. In addition to the COI barcode, our results include the first published 16S sequences for these groups. We found 11 operational taxonomic units (OTUs): 9 in the genus Atlanta, 1 Carinaria and 1 Firoloida. We report the presence of Atlanta oligogyra (Clades A and B), Atlanta turriculata, Atlanta lesueurii, Atlanta helicinoidea (Clade B), Atlanta plana, Atlanta echinogyra, Atlanta inflata and Atlanta frontieri through comparisons of our sequences with previously published sequences. We did not find Atlanta gaudichaudi, Atlanta inclinata, Atlanta tokiokai, Atlanta gibbosa, Atlanta peronii, or Oxygyrus inflatus, which have previously been reported from the region. Haplotype networks and estimates of ΦST illustrate how some species show population differentiation across the tropical Indo-Pacific region, whereas others show little apparent population structure. For example, the most common haplotypes of A. inflata and of A. turriculata occur in the Indian Ocean, the Central and West Pacific and the tropical East Pacific, whereas individuals of A. frontieri from the Indian Ocean do not share haplotypes with individuals of A. frontieri from the Pacific Ocean. Analyses were limited by sample sizes, but these data suggest that population genetics approaches may be useful for reconstructing population histories of these important, but overlooked, components of the plankton.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.