DNA碱基在气相和氯仿溶液中的瞬时吸收:比较量子力学研究

D. Fedotov, Alexander C Paul, H. Koch, F. Santoro, S. Coriani, R. Improta
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摘要

采用不同的单参考量子力学方法,即运动方程耦合簇单双(EOM-CCSD)、单双和摄动三重(EOM-CC3)和时变密度泛函数理论(TD-DFT),利用远程校正的CAM-B3LYP泛函数研究了四种DNA碱基(胸腺嘧啶、腺嘌呤和鸟嘌呤)的激发态吸收(ESA)特性。本文报道了胸腺嘧啶在tam - dancoff (TDA) CAM-B3LYP水平上使用最大重叠法(MOM)的初步结果。在气相中,这三种方法预测的单光子吸收(OPA)光谱相似,这也与实验结果和文献中最精确的计算研究相一致。然后计算与最低能量吸收带相关的pp态(一个为嘧啶态,两个为嘌呤态)和靠近np态的ESA光谱。EOM-CC3、EOM-CCSD和CAM-B3LYP方法提供了相似的ESA光谱模式,也与文献RASPT2结果在定性上一致。在气相验证后,TD-CAM-B3LYP被用于计算氯仿中的ESA,包括极化连续介质模型(PCM)的溶剂效应。预测的氯仿中的OPA和ESA光谱与气相中的非常相似,大部分谱带的位移小于0.1 eV,强度略有增加,np态有适度的不稳定。最后,从最低能量pp态的最小值计算欧空局光谱,并与溶液中核苷的可用实验瞬态吸收光谱相一致,为我们的计算方法提供了最终的验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Transient Absorption of DNA bases in the gas phase and in chloroform solution: a comparative quantum mechanical study
We study the excited state absorption (ESA) properties of the four DNA bases (thymine, cytosine, adenine, and guanine) by different single reference quantum mechanical methods, i.e. equation of motion coupled cluster singles and doubles (EOM-CCSD), singles, doubles and perturbative triples (EOM-CC3), and time-dependent density functional theory (TD-DFT), with the long-range corrected CAM-B3LYP functional. Preliminary results at the Tamm-Dancoff (TDA) CAM-B3LYP level using the maximum overlap method (MOM) are reported for Thymine. In the gas phase, the three methods predict similar One Photon Absorption (OPA) spectra, which are also consistent with the experimental results and with the most accurate computational studies available in the literature. The ESA spectra are then computed for the pp  states (one for pyrimidine, two for purines) associated with the lowest energy absorption band, and for the close-lying np  state. The EOM-CC3, EOM-CCSD and CAM-B3LYP methods provide similar ESA spectral patterns, which are also in qualitative agreement with literature RASPT2 results. Once validated in the gas phase, TD-CAM-B3LYP has been used to compute the ESA in chloroform, including solvent effect by the polarizable continuum model (PCM). The predicted OPA and ESA spectra in chloroform are very similar to those in the gas phase, most of the bands shifting by less than 0.1 eV, with a small increase of the intensities and a moderate destabilization of the np  state. Finally, ESA spectra have been computed from the minima of the lowest energy pp  state, and are consistent with the available experimental transient absorption spectra of the nucleosides in solution, providing a final validation of our computational approach.
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