南非森林生活蜗牛(软体动物:腹足纲)的条形码揭示了广泛的隐藏多样性

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Evelyn M. Raphalo, Mary L. Cole, Savel R. Daniels
{"title":"南非森林生活蜗牛(软体动物:腹足纲)的条形码揭示了广泛的隐藏多样性","authors":"Evelyn M. Raphalo,&nbsp;Mary L. Cole,&nbsp;Savel R. Daniels","doi":"10.1111/ivb.12348","DOIUrl":null,"url":null,"abstract":"<p>South Africa harbors a rich and diverse terrestrial snail fauna. Despite their importance in ecosystem functioning and structure, their alpha taxonomic diversity is poorly understood, and most groups have not been the subject of molecular systematic scrutiny. During the present study, we used the mitochondrial <i>cytochrome c oxidase subunit I</i> (<i>COI</i>) locus to start a DNA barcode reference library, to examine intra- and interspecific genetic divergence, and to explore the presence of cryptic diversity among terrestrial gastropods from forested regions in the country. We generated 399 <i>COI</i> barcodes comprising 70 morphospecies in 26 genera and 15 families, representing nearly 10% of the described gastropod diversity in South Africa. Our results showed a substantial overlap between mean intraspecific and interspecific genetic variation and no barcoding gap. Three species delimitation methods—Poisson Tree Processes (PTP), Refined Single Linkage (RESL) algorithm in Barcode of Life Data Systems, and the Automatic Barcode Gap Discovery (ABGD)—applied to selected widespread species retrieved incongruent operational taxonomic units (OTUs). These results, coupled with high intraspecific variation, suggested cryptic diversity among several terrestrial gastropod genera in the country. We further demonstrated that DNA barcoding analysis holds the potential for highlighting cryptic lineages in snails and for revealing taxa in need of taxonomic revision. We recommend that future taxonomic studies of South African terrestrial snails incorporate multiple sources of information for species delimitation.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2021-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Barcoding of South African forest-dwelling snails (Mollusca: Gastropoda) reveals widespread cryptic diversity\",\"authors\":\"Evelyn M. Raphalo,&nbsp;Mary L. Cole,&nbsp;Savel R. Daniels\",\"doi\":\"10.1111/ivb.12348\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>South Africa harbors a rich and diverse terrestrial snail fauna. Despite their importance in ecosystem functioning and structure, their alpha taxonomic diversity is poorly understood, and most groups have not been the subject of molecular systematic scrutiny. During the present study, we used the mitochondrial <i>cytochrome c oxidase subunit I</i> (<i>COI</i>) locus to start a DNA barcode reference library, to examine intra- and interspecific genetic divergence, and to explore the presence of cryptic diversity among terrestrial gastropods from forested regions in the country. We generated 399 <i>COI</i> barcodes comprising 70 morphospecies in 26 genera and 15 families, representing nearly 10% of the described gastropod diversity in South Africa. Our results showed a substantial overlap between mean intraspecific and interspecific genetic variation and no barcoding gap. Three species delimitation methods—Poisson Tree Processes (PTP), Refined Single Linkage (RESL) algorithm in Barcode of Life Data Systems, and the Automatic Barcode Gap Discovery (ABGD)—applied to selected widespread species retrieved incongruent operational taxonomic units (OTUs). These results, coupled with high intraspecific variation, suggested cryptic diversity among several terrestrial gastropod genera in the country. We further demonstrated that DNA barcoding analysis holds the potential for highlighting cryptic lineages in snails and for revealing taxa in need of taxonomic revision. We recommend that future taxonomic studies of South African terrestrial snails incorporate multiple sources of information for species delimitation.</p>\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2021-10-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/ivb.12348\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/ivb.12348","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 2

摘要

南非拥有丰富多样的陆生蜗牛动物群。尽管它们在生态系统功能和结构中具有重要意义,但它们的α分类多样性却鲜为人知,而且大多数类群尚未成为分子系统审查的主题。在本研究中,我们利用线粒体细胞色素c氧化酶亚基I (COI)位点建立了DNA条形码参考文库,研究了种内和种间的遗传差异,并探讨了该国森林地区陆生腹足类动物之间存在的隐多样性。我们生成了399个COI条形码,包括15科26属70种形态,代表了南非所描述的腹足动物多样性的近10%。我们的研究结果表明,种内和种间的平均遗传变异有很大的重叠,没有条形码差距。应用泊松树过程(PTP)、生命条形码数据系统中的精化单链接(RESL)算法和自动条形码缺口发现(ABGD)三种物种划分方法对广泛分布的物种检索到的不一致操作分类单元(otu)进行了研究。这些结果,加上高度的种内变异,表明该国几个陆生腹足类属之间存在隐性多样性。我们进一步证明了DNA条形码分析具有突出蜗牛的隐谱系和揭示需要分类修订的分类群的潜力。我们建议未来对南非陆生蜗牛的分类研究应结合多种信息来源进行物种划分。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Barcoding of South African forest-dwelling snails (Mollusca: Gastropoda) reveals widespread cryptic diversity

South Africa harbors a rich and diverse terrestrial snail fauna. Despite their importance in ecosystem functioning and structure, their alpha taxonomic diversity is poorly understood, and most groups have not been the subject of molecular systematic scrutiny. During the present study, we used the mitochondrial cytochrome c oxidase subunit I (COI) locus to start a DNA barcode reference library, to examine intra- and interspecific genetic divergence, and to explore the presence of cryptic diversity among terrestrial gastropods from forested regions in the country. We generated 399 COI barcodes comprising 70 morphospecies in 26 genera and 15 families, representing nearly 10% of the described gastropod diversity in South Africa. Our results showed a substantial overlap between mean intraspecific and interspecific genetic variation and no barcoding gap. Three species delimitation methods—Poisson Tree Processes (PTP), Refined Single Linkage (RESL) algorithm in Barcode of Life Data Systems, and the Automatic Barcode Gap Discovery (ABGD)—applied to selected widespread species retrieved incongruent operational taxonomic units (OTUs). These results, coupled with high intraspecific variation, suggested cryptic diversity among several terrestrial gastropod genera in the country. We further demonstrated that DNA barcoding analysis holds the potential for highlighting cryptic lineages in snails and for revealing taxa in need of taxonomic revision. We recommend that future taxonomic studies of South African terrestrial snails incorporate multiple sources of information for species delimitation.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信