{"title":"南非森林生活蜗牛(软体动物:腹足纲)的条形码揭示了广泛的隐藏多样性","authors":"Evelyn M. Raphalo, Mary L. Cole, Savel R. Daniels","doi":"10.1111/ivb.12348","DOIUrl":null,"url":null,"abstract":"<p>South Africa harbors a rich and diverse terrestrial snail fauna. Despite their importance in ecosystem functioning and structure, their alpha taxonomic diversity is poorly understood, and most groups have not been the subject of molecular systematic scrutiny. During the present study, we used the mitochondrial <i>cytochrome c oxidase subunit I</i> (<i>COI</i>) locus to start a DNA barcode reference library, to examine intra- and interspecific genetic divergence, and to explore the presence of cryptic diversity among terrestrial gastropods from forested regions in the country. We generated 399 <i>COI</i> barcodes comprising 70 morphospecies in 26 genera and 15 families, representing nearly 10% of the described gastropod diversity in South Africa. Our results showed a substantial overlap between mean intraspecific and interspecific genetic variation and no barcoding gap. Three species delimitation methods—Poisson Tree Processes (PTP), Refined Single Linkage (RESL) algorithm in Barcode of Life Data Systems, and the Automatic Barcode Gap Discovery (ABGD)—applied to selected widespread species retrieved incongruent operational taxonomic units (OTUs). These results, coupled with high intraspecific variation, suggested cryptic diversity among several terrestrial gastropod genera in the country. We further demonstrated that DNA barcoding analysis holds the potential for highlighting cryptic lineages in snails and for revealing taxa in need of taxonomic revision. We recommend that future taxonomic studies of South African terrestrial snails incorporate multiple sources of information for species delimitation.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2021-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Barcoding of South African forest-dwelling snails (Mollusca: Gastropoda) reveals widespread cryptic diversity\",\"authors\":\"Evelyn M. Raphalo, Mary L. Cole, Savel R. Daniels\",\"doi\":\"10.1111/ivb.12348\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>South Africa harbors a rich and diverse terrestrial snail fauna. Despite their importance in ecosystem functioning and structure, their alpha taxonomic diversity is poorly understood, and most groups have not been the subject of molecular systematic scrutiny. During the present study, we used the mitochondrial <i>cytochrome c oxidase subunit I</i> (<i>COI</i>) locus to start a DNA barcode reference library, to examine intra- and interspecific genetic divergence, and to explore the presence of cryptic diversity among terrestrial gastropods from forested regions in the country. We generated 399 <i>COI</i> barcodes comprising 70 morphospecies in 26 genera and 15 families, representing nearly 10% of the described gastropod diversity in South Africa. Our results showed a substantial overlap between mean intraspecific and interspecific genetic variation and no barcoding gap. Three species delimitation methods—Poisson Tree Processes (PTP), Refined Single Linkage (RESL) algorithm in Barcode of Life Data Systems, and the Automatic Barcode Gap Discovery (ABGD)—applied to selected widespread species retrieved incongruent operational taxonomic units (OTUs). These results, coupled with high intraspecific variation, suggested cryptic diversity among several terrestrial gastropod genera in the country. We further demonstrated that DNA barcoding analysis holds the potential for highlighting cryptic lineages in snails and for revealing taxa in need of taxonomic revision. We recommend that future taxonomic studies of South African terrestrial snails incorporate multiple sources of information for species delimitation.</p>\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2021-10-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/ivb.12348\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/ivb.12348","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Barcoding of South African forest-dwelling snails (Mollusca: Gastropoda) reveals widespread cryptic diversity
South Africa harbors a rich and diverse terrestrial snail fauna. Despite their importance in ecosystem functioning and structure, their alpha taxonomic diversity is poorly understood, and most groups have not been the subject of molecular systematic scrutiny. During the present study, we used the mitochondrial cytochrome c oxidase subunit I (COI) locus to start a DNA barcode reference library, to examine intra- and interspecific genetic divergence, and to explore the presence of cryptic diversity among terrestrial gastropods from forested regions in the country. We generated 399 COI barcodes comprising 70 morphospecies in 26 genera and 15 families, representing nearly 10% of the described gastropod diversity in South Africa. Our results showed a substantial overlap between mean intraspecific and interspecific genetic variation and no barcoding gap. Three species delimitation methods—Poisson Tree Processes (PTP), Refined Single Linkage (RESL) algorithm in Barcode of Life Data Systems, and the Automatic Barcode Gap Discovery (ABGD)—applied to selected widespread species retrieved incongruent operational taxonomic units (OTUs). These results, coupled with high intraspecific variation, suggested cryptic diversity among several terrestrial gastropod genera in the country. We further demonstrated that DNA barcoding analysis holds the potential for highlighting cryptic lineages in snails and for revealing taxa in need of taxonomic revision. We recommend that future taxonomic studies of South African terrestrial snails incorporate multiple sources of information for species delimitation.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.