绿豆(Vigna radiata)的全基因组鉴定[j]。晚期胚胎发生丰度(LEA)蛋白基因家族

IF 0.9 4区 生物学 Q4 PLANT SCIENCES
R. Likhith, G. Alagarasan, R. Muthurajan, Boominathan Parasuraman, R. Subramanian
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引用次数: 0

摘要

绿豆(Vigna radiata L. Wilczek)是一种重要的豆科作物,具有宝贵的营养和健康效益,受到干旱条件的严重影响。干燥耐受性是种子在储存和胁迫条件下生存和维持生理活动的能力。LEA蛋白是一组帮助植物在缺水胁迫下生存的应激相关蛋白。在这里,我们对绿豆LEA (VrLEA)基因进行了全基因组分析,并进行了计算机物理/功能表征。基因定位结果表明,11条染色体均含有307个VrLEAs,但分布不均匀。LEA基因上游启动子序列分析发现,MYB转录因子(TF)的发生率高于bZIP、AP2、WRKY、NAC和bHLH等转录因子。此外,基于干旱响应数据,我们将分析下行到更少的vrlea。从早期实验数据中获得的VrLEAs进行了细胞器定位检查,发现它们是细胞内功能蛋白。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genome wide identification of mungbean (Vigna radiata [L.] R. Wilczek) Late Embryogenesis Abundant (LEA) protein gene family
Mungbean (Vigna radiata L. Wilczek) an important legume crop with valuable nutritional and health benefits is severely affected by drought conditions. Desiccation tolerance is a capacity of seeds to survive and maintain physiological activities during storage and stress conditions. LEA proteins are group of stress associated proteins that help the plants survive water deficit stress. Here we have performed genome-wide analysis of mungbean LEA (VrLEA) genes, and also insilico physical/functional characterization. Gene-positioning showed that 307 VrLEAs are present in all the eleven chromosomes, but are unevenly distributed.Upstream promoter sequence analysis of LEA genes revealed the occurrence of MYB transcription factor (TF)in higher number compared to other TFs i.e., bZIP, AP2, WRKY, NAC and bHLH.Further, we downstreamed our analysis to fewer VrLEAs, based on drought responsive data. The VrLEAs obtained from the earlier experimental data were examined for its organelle localization and found that they are intracellular functional proteins.
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来源期刊
Israel Journal of Plant Sciences
Israel Journal of Plant Sciences 生物-植物科学
CiteScore
1.90
自引率
0.00%
发文量
17
审稿时长
>12 weeks
期刊介绍: The Israel Journal of Plant Sciences is an international journal of extensive scope that publishes special issues dealing with all aspects of plant sciences, including but not limited to: physiology, cell biology, development, botany, genetic
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