超越计算可重复性的框架:来自COVID - 19地理分析的三次再现的教训

IF 3.3 3区 地球科学 Q1 GEOGRAPHY
Peter Kedron, Sarah Bardin, Joseph Holler, Joshua Gilman, Bryant Grady, Megan Seeley, Xin Wang, Wenxin Yang
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引用次数: 0

摘要

尽管最近有人呼吁让地理分析更具可复制性,但在地理文献中,复制或复制已发表作品的正式尝试在很大程度上仍然缺失。现有的地理研究的复制品通常侧重于计算再现性——是否可以使用作者提供的数据和代码重新创建结果——而不是评估原始分析的结论、内部有效性和证据价值。然而,如果复制的目标是识别和纠正我们知识中的错误,那么知道一项研究在计算上是否是可复制的是不够的。我们认为,地理工作的复制应该侧重于评估现有实证研究中的发现和主张是否得到所提供证据的充分支持。我们的目标是通过引入一个进行生殖研究的模型框架,展示其用途,并报告三项示范研究的结果,来促进这一转变。我们提出了三个基于通用开放获取模板的COVID-19地理分析模型复制品。每一次复制尝试都以开放式存储库的形式发布,包括预分析计划、数据、代码和最终报告。我们发现每项研究都是部分可重复的,但在超越计算可重复性的基础上,我们的评估揭示了概念和方法上的问题,这些问题引发了对每项研究中呈现的相关性的预测价值和大小的质疑。总之,这些复制品和我们的模板材料提供了一个实用的框架,其他人可以用来复制和复制经验空间分析,并最终促进地理文献中错误的识别和纠正。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A Framework for Moving Beyond Computational Reproducibility: Lessons from Three Reproductions of Geographical Analyses of COVID-19

A Framework for Moving Beyond Computational Reproducibility: Lessons from Three Reproductions of Geographical Analyses of COVID-19

Despite recent calls to make geographical analyses more reproducible, formal attempts to reproduce or replicate published work remain largely absent from the geographic literature. The reproductions of geographic research that do exist typically focus on computational reproducibility—whether results can be recreated using data and code provided by the authors—rather than on evaluating the conclusion and internal validity and evidential value of the original analysis. However, knowing if a study is computationally reproducible is insufficient if the goal of a reproduction is to identify and correct errors in our knowledge. We argue that reproductions of geographic work should focus on assessing whether the findings and claims made in existing empirical studies are well supported by the evidence presented. We aim to facilitate this transition by introducing a model framework for conducting reproduction studies, demonstrating its use, and reporting the findings of three exemplar studies. We present three model reproductions of geographical analyses of COVID-19 based on a common, open access template. Each reproduction attempt is published as an open access repository, complete with pre-analysis plan, data, code, and final report. We find each study to be partially reproducible, but moving past computational reproducibility, our assessments reveal conceptual and methodological concerns that raise questions about the predictive value and the magnitude of the associations presented in each study. Collectively, these reproductions and our template materials offer a practical framework others can use to reproduce and replicate empirical spatial analyses and ultimately facilitate the identification and correction of errors in the geographic literature.

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来源期刊
CiteScore
8.70
自引率
5.60%
发文量
40
期刊介绍: First in its specialty area and one of the most frequently cited publications in geography, Geographical Analysis has, since 1969, presented significant advances in geographical theory, model building, and quantitative methods to geographers and scholars in a wide spectrum of related fields. Traditionally, mathematical and nonmathematical articulations of geographical theory, and statements and discussions of the analytic paradigm are published in the journal. Spatial data analyses and spatial econometrics and statistics are strongly represented.
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