Mayra A. Sáenz Oviedo, William R. Kuhn, Martin A. Rondon Sepulveda, J. Abbott, J. Ware, Melissa Sánchez-Herrera
{"title":"翅膀轮廓是好的分类器自动识别在Odonata?从目标翼数字化(TOWD)项目的观点","authors":"Mayra A. Sáenz Oviedo, William R. Kuhn, Martin A. Rondon Sepulveda, J. Abbott, J. Ware, Melissa Sánchez-Herrera","doi":"10.48156/1388.2022.1917184","DOIUrl":null,"url":null,"abstract":"In recent decades, a lack of available knowledge about the magnitude, identity and distribution of biodiversity has given way to a taxonomic impediment where species are not being described as fast as the rate of extinction. Using Machine Learning methods based on seven different algorithms (LR, CART, KNN, GNB, LDA, SVM and RFC) we have created an automatic identification approach for odonate genera, through images of wing contours. The training population is composed of the collected specimens that have been digitized in the framework of the NSF funded Odomatic and TOWD projects. Each contour was pre-processed, and 80 coefficients were extracted for each specimen. These form a database with 4656 rows and 80 columns, which was divided into 70% for training and 30% for testing the classifiers. The classifier with the best performance was a Linear Discriminant Analysis (LDA), which discriminated the highest number of classes (100) with an accuracy value of 0.7337, precision of 0.75, recall of 0.73 and a F1 score of 0.73. Additionally, two main confusion groups are reported, among genera within the suborders of Anisoptera and Zygoptera. These confusion groups suggest a need to include other morphological characters that complement the wing information used for the classification of these groups thereby improving accuracy of classification. Likewise, the findings of this work open the door to the application of machine learning methods for the identification of species in Odonata and in insects more broadly which would potentially reduce the impact of the taxonomic impediment.","PeriodicalId":50297,"journal":{"name":"International Journal of Odonatology","volume":null,"pages":null},"PeriodicalIF":1.0000,"publicationDate":"2022-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Are wing contours good classifiers for automatic identification in Odonata? A view from the Targeted Odonata Wing Digitization (TOWD) project\",\"authors\":\"Mayra A. Sáenz Oviedo, William R. Kuhn, Martin A. Rondon Sepulveda, J. Abbott, J. Ware, Melissa Sánchez-Herrera\",\"doi\":\"10.48156/1388.2022.1917184\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In recent decades, a lack of available knowledge about the magnitude, identity and distribution of biodiversity has given way to a taxonomic impediment where species are not being described as fast as the rate of extinction. Using Machine Learning methods based on seven different algorithms (LR, CART, KNN, GNB, LDA, SVM and RFC) we have created an automatic identification approach for odonate genera, through images of wing contours. The training population is composed of the collected specimens that have been digitized in the framework of the NSF funded Odomatic and TOWD projects. Each contour was pre-processed, and 80 coefficients were extracted for each specimen. These form a database with 4656 rows and 80 columns, which was divided into 70% for training and 30% for testing the classifiers. The classifier with the best performance was a Linear Discriminant Analysis (LDA), which discriminated the highest number of classes (100) with an accuracy value of 0.7337, precision of 0.75, recall of 0.73 and a F1 score of 0.73. Additionally, two main confusion groups are reported, among genera within the suborders of Anisoptera and Zygoptera. These confusion groups suggest a need to include other morphological characters that complement the wing information used for the classification of these groups thereby improving accuracy of classification. Likewise, the findings of this work open the door to the application of machine learning methods for the identification of species in Odonata and in insects more broadly which would potentially reduce the impact of the taxonomic impediment.\",\"PeriodicalId\":50297,\"journal\":{\"name\":\"International Journal of Odonatology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.0000,\"publicationDate\":\"2022-12-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Journal of Odonatology\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.48156/1388.2022.1917184\",\"RegionNum\":4,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"ENTOMOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Odonatology","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.48156/1388.2022.1917184","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"ENTOMOLOGY","Score":null,"Total":0}
Are wing contours good classifiers for automatic identification in Odonata? A view from the Targeted Odonata Wing Digitization (TOWD) project
In recent decades, a lack of available knowledge about the magnitude, identity and distribution of biodiversity has given way to a taxonomic impediment where species are not being described as fast as the rate of extinction. Using Machine Learning methods based on seven different algorithms (LR, CART, KNN, GNB, LDA, SVM and RFC) we have created an automatic identification approach for odonate genera, through images of wing contours. The training population is composed of the collected specimens that have been digitized in the framework of the NSF funded Odomatic and TOWD projects. Each contour was pre-processed, and 80 coefficients were extracted for each specimen. These form a database with 4656 rows and 80 columns, which was divided into 70% for training and 30% for testing the classifiers. The classifier with the best performance was a Linear Discriminant Analysis (LDA), which discriminated the highest number of classes (100) with an accuracy value of 0.7337, precision of 0.75, recall of 0.73 and a F1 score of 0.73. Additionally, two main confusion groups are reported, among genera within the suborders of Anisoptera and Zygoptera. These confusion groups suggest a need to include other morphological characters that complement the wing information used for the classification of these groups thereby improving accuracy of classification. Likewise, the findings of this work open the door to the application of machine learning methods for the identification of species in Odonata and in insects more broadly which would potentially reduce the impact of the taxonomic impediment.
期刊介绍:
International Journal of Odonatology (IJO) is aimed at providing a publication outlet for the growing number of students of Odonata. It will address subjects such as the ecology, ethology, physiology, genetics, taxonomy, phylogeny and geographic distribution of species. Reviews will be by invitation, but authors who plan to write a review on a subject of interest to the journal are encouraged to contact the editor.