印度尼西亚野生斗鱼coi基因序列的DNA条形码:系统发育、地位和多样性

M. Fahmi, Eni Kusrini, Erma P. Hayuningtiyas, S. Sinansari, R. Gustiano
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引用次数: 6

摘要

野生斗鱼是一种潜在的观赏鱼出口商品,通常由贸易商或业余爱好者在野外捕获。然而,自然界野生斗鱼的数量已经下降,并成为其可持续性的威胁。本研究利用印尼野生斗鱼DNA COI基因序列分析其遗传多样性、系统发育关系及分子鉴定。本研究共采集了92份野生斗鱼标本。用Fish F1、Fish R1、Fish F2和Fish R2引物扩增COI基因。利用MEGA version 5软件分析其遗传多样性和系统发育关系。采用BLAST程序对标本进行物种鉴定,DNA序列相似性值为98100%,为同一物种。系统发育树构建显示了7个单系进化枝,表明smaragdina是印度尼西亚水域斗鱼属的祖先种。种间遗传距离为0.02 ~ 0.30,种内遗传距离为0 ~ 6.54。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
DNA BARCODING USING COI GENE SEQUENCES OF WILD BETTA FIGHTING FISH FROM INDONESIA: PHYLOGENY, STATUS AND DIVERSITY
The wild betta fish is a potential ornamental fish export commodity normally caught by traders or hobbyists in the wild. However, the population of wild betta in nature has declined and become a threat for their sustainability. This research was conducted to analyze the genetic diversity, phylogenetic relationships, and molecular identification through DNA COI gene sequence of Indonesian wild betta fish. A total of 92 wild betta fish specimens were collected in this study. Amplification of COI genes was carried out using Fish F1, Fish R1, Fish F2, and Fish R2 primers. The genetic diversity and phylogenetic relationships were analyzed using MEGA version 5 software program. Species identification of the specimen was conducted using BLAST program with 98100% similarity value of the DNA sequences to indicate the same species. Phylogenetic tree construction showed seven monophyletic clades and showed that Betta smaragdina was the ancestral species of genus Betta in Indonesian waters. Genetic distance among species ranged from 0.02 to 0.30, whereas intra-species genetic distance ranged from 0 to 6.54.
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