{"title":"六种野生毒蘑菇的基因组草图。","authors":"Sittiporn Parnmen, Nattakarn Nooron, Sujitra Sikaphan, Chutimon Uttawichai, Dutsadee Polputpisatkul, Sriprapa Phatsarapongkul, Rungsaeng Chankunasuka, Unchalee Nitma, Chidkamon Thunkhamrak, Nisakorn Palakul, Khwanruan Naksuwankul, Onanong Pringsulaka, Achariya Rangsiruji","doi":"10.7150/jgen.75652","DOIUrl":null,"url":null,"abstract":"<p><p>Foodborne illnesses caused by wild mushroom poisoning occur globally and have led to food safety concerns. Here, we reported <i>de novo</i> genome assemblies of the six most commonly encountered toxic mushrooms in Thailand. These comprised <i>Amanita brunneitoxicaria</i>, <i>Cantharocybe virosa</i>, <i>Chlorophyllum molybdites</i>, <i>Entoloma mastoideum</i>, <i>Pseudosperma</i> sp. and <i>Russula subnigricans</i>. The nuclear genome sizes of these species ranged from 40 to 77 Mb, with the number of predicted genes ranging from 5,375 to 14,099. The mitogenome sizes varied from 41,555 to 78,907 bp. The resulting draft genomes of these poisonous mushrooms provide insights into toxin-related genes that may be used to establish genetic markers for monitoring mushroom poisoning outbreaks.</p>","PeriodicalId":15834,"journal":{"name":"Journal of Genomics","volume":" ","pages":"57-60"},"PeriodicalIF":0.0000,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9379371/pdf/","citationCount":"1","resultStr":"{\"title\":\"Draft Genomes of Six Wild Poisonous Mushrooms.\",\"authors\":\"Sittiporn Parnmen, Nattakarn Nooron, Sujitra Sikaphan, Chutimon Uttawichai, Dutsadee Polputpisatkul, Sriprapa Phatsarapongkul, Rungsaeng Chankunasuka, Unchalee Nitma, Chidkamon Thunkhamrak, Nisakorn Palakul, Khwanruan Naksuwankul, Onanong Pringsulaka, Achariya Rangsiruji\",\"doi\":\"10.7150/jgen.75652\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Foodborne illnesses caused by wild mushroom poisoning occur globally and have led to food safety concerns. Here, we reported <i>de novo</i> genome assemblies of the six most commonly encountered toxic mushrooms in Thailand. These comprised <i>Amanita brunneitoxicaria</i>, <i>Cantharocybe virosa</i>, <i>Chlorophyllum molybdites</i>, <i>Entoloma mastoideum</i>, <i>Pseudosperma</i> sp. and <i>Russula subnigricans</i>. The nuclear genome sizes of these species ranged from 40 to 77 Mb, with the number of predicted genes ranging from 5,375 to 14,099. The mitogenome sizes varied from 41,555 to 78,907 bp. The resulting draft genomes of these poisonous mushrooms provide insights into toxin-related genes that may be used to establish genetic markers for monitoring mushroom poisoning outbreaks.</p>\",\"PeriodicalId\":15834,\"journal\":{\"name\":\"Journal of Genomics\",\"volume\":\" \",\"pages\":\"57-60\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9379371/pdf/\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Genomics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.7150/jgen.75652\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2022/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Genomics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.7150/jgen.75652","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
Foodborne illnesses caused by wild mushroom poisoning occur globally and have led to food safety concerns. Here, we reported de novo genome assemblies of the six most commonly encountered toxic mushrooms in Thailand. These comprised Amanita brunneitoxicaria, Cantharocybe virosa, Chlorophyllum molybdites, Entoloma mastoideum, Pseudosperma sp. and Russula subnigricans. The nuclear genome sizes of these species ranged from 40 to 77 Mb, with the number of predicted genes ranging from 5,375 to 14,099. The mitogenome sizes varied from 41,555 to 78,907 bp. The resulting draft genomes of these poisonous mushrooms provide insights into toxin-related genes that may be used to establish genetic markers for monitoring mushroom poisoning outbreaks.
期刊介绍：
Journal of Genomics publishes papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Articles published by the journal are rigorously peer-reviewed. Types of articles include: Research paper, Short research communication, Review or mini-reviews, Commentary, Database, Software.
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