{"title":"基于SLC家族的胃腺癌模型的综合分子分析。","authors":"Tao Yu, Shao-Kun Yu, Kai-Hua Lu","doi":"10.3389/pore.2022.1610610","DOIUrl":null,"url":null,"abstract":"<p><p><b>Background:</b> Solute carrier (SLC) family members are crucial in transporting amino acids across membranes. Amino acids are indispensable for both cancer and immune cells. However, the clinical significance of amino acid transporting SLC members in stomach adenocarcinoma (STAD) remains unclear. This study aimed to develop an SLC family-based model to predict the prognosis and the response of STAD patients to immunotherapy. <b>Methods:</b> A total of 1239 tumor cases were obtained from online databases. The training set (<i>n</i> = 371) consisted of RNA sequencing profiles obtained from The Cancer Genome Atlas (TCGA), while those from Gene Expression Omnibus (GEO) were used as the test set. Subsequently, the clinical characteristics and immune profiles were investigated, and potential immunotherapy response prediction values of the model were assessed. <b>Results:</b> Based on the TCGA cohort, an SLC family-based model was developed using multivariate Cox analysis. All tumor cases were stratified into high- and low-risk groups considering the SLC model. High-risk patients had a worse overall survival (OS) than low-risk patients, consistent with the results of GEO cohorts. Comprehensive analyses revealed that the high-risk group was correlated with aggressiveness-related pathways, whereas the low-risk group had better T helper cell infiltration and stronger immunotherapy response. Compared to the high-risk group, the low-risk group presented increased PD-L1 and tumor mutation burden. <b>Conclusion:</b> This SLC family-based model has the potential to predict the prognosis and immunotherapy outcomes of STAD patients. The survival of patients in the low-risk group was greatly prolonged, and the patients may benefit more from immunotherapy.</p>","PeriodicalId":411887,"journal":{"name":"Pathology oncology research : POR","volume":" ","pages":"1610610"},"PeriodicalIF":0.0000,"publicationDate":"2022-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9606230/pdf/","citationCount":"2","resultStr":"{\"title\":\"Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma.\",\"authors\":\"Tao Yu, Shao-Kun Yu, Kai-Hua Lu\",\"doi\":\"10.3389/pore.2022.1610610\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b>Background:</b> Solute carrier (SLC) family members are crucial in transporting amino acids across membranes. Amino acids are indispensable for both cancer and immune cells. However, the clinical significance of amino acid transporting SLC members in stomach adenocarcinoma (STAD) remains unclear. This study aimed to develop an SLC family-based model to predict the prognosis and the response of STAD patients to immunotherapy. <b>Methods:</b> A total of 1239 tumor cases were obtained from online databases. The training set (<i>n</i> = 371) consisted of RNA sequencing profiles obtained from The Cancer Genome Atlas (TCGA), while those from Gene Expression Omnibus (GEO) were used as the test set. Subsequently, the clinical characteristics and immune profiles were investigated, and potential immunotherapy response prediction values of the model were assessed. <b>Results:</b> Based on the TCGA cohort, an SLC family-based model was developed using multivariate Cox analysis. All tumor cases were stratified into high- and low-risk groups considering the SLC model. High-risk patients had a worse overall survival (OS) than low-risk patients, consistent with the results of GEO cohorts. Comprehensive analyses revealed that the high-risk group was correlated with aggressiveness-related pathways, whereas the low-risk group had better T helper cell infiltration and stronger immunotherapy response. Compared to the high-risk group, the low-risk group presented increased PD-L1 and tumor mutation burden. <b>Conclusion:</b> This SLC family-based model has the potential to predict the prognosis and immunotherapy outcomes of STAD patients. The survival of patients in the low-risk group was greatly prolonged, and the patients may benefit more from immunotherapy.</p>\",\"PeriodicalId\":411887,\"journal\":{\"name\":\"Pathology oncology research : POR\",\"volume\":\" \",\"pages\":\"1610610\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-10-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9606230/pdf/\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Pathology oncology research : POR\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.3389/pore.2022.1610610\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2022/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Pathology oncology research : POR","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.3389/pore.2022.1610610","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 2
摘要
背景:溶质载体(SLC)家族成员在氨基酸跨膜运输中起着至关重要的作用。氨基酸对癌细胞和免疫细胞都是不可或缺的。然而,氨基酸转运SLC成员在胃腺癌(STAD)中的临床意义尚不清楚。本研究旨在建立一个基于SLC家族的模型来预测STAD患者的预后和对免疫治疗的反应。方法:从在线数据库中获取1239例肿瘤病例。训练集(n = 371)由来自The Cancer Genome Atlas (TCGA)的RNA测序图谱组成,而来自Gene Expression Omnibus (GEO)的RNA测序图谱作为测试集。随后,研究了临床特征和免疫特征,并评估了该模型的潜在免疫治疗反应预测值。结果:基于TCGA队列,采用多变量Cox分析建立基于SLC家族的模型。根据SLC模型,将所有肿瘤病例分为高危组和低危组。高风险患者的总生存期(OS)比低风险患者差,这与GEO队列的结果一致。综合分析发现,高风险组与侵袭性相关通路相关,而低风险组具有更好的T辅助细胞浸润和更强的免疫治疗反应。与高危组相比,低危组PD-L1和肿瘤突变负担增加。结论:该基于SLC家族的模型具有预测STAD患者预后和免疫治疗结果的潜力。低危组患者的生存期大大延长,免疫治疗对患者的益处可能更大。
Comprehensive Molecular Analyses of an SLC Family-Based Model in Stomach Adenocarcinoma.
Background: Solute carrier (SLC) family members are crucial in transporting amino acids across membranes. Amino acids are indispensable for both cancer and immune cells. However, the clinical significance of amino acid transporting SLC members in stomach adenocarcinoma (STAD) remains unclear. This study aimed to develop an SLC family-based model to predict the prognosis and the response of STAD patients to immunotherapy. Methods: A total of 1239 tumor cases were obtained from online databases. The training set (n = 371) consisted of RNA sequencing profiles obtained from The Cancer Genome Atlas (TCGA), while those from Gene Expression Omnibus (GEO) were used as the test set. Subsequently, the clinical characteristics and immune profiles were investigated, and potential immunotherapy response prediction values of the model were assessed. Results: Based on the TCGA cohort, an SLC family-based model was developed using multivariate Cox analysis. All tumor cases were stratified into high- and low-risk groups considering the SLC model. High-risk patients had a worse overall survival (OS) than low-risk patients, consistent with the results of GEO cohorts. Comprehensive analyses revealed that the high-risk group was correlated with aggressiveness-related pathways, whereas the low-risk group had better T helper cell infiltration and stronger immunotherapy response. Compared to the high-risk group, the low-risk group presented increased PD-L1 and tumor mutation burden. Conclusion: This SLC family-based model has the potential to predict the prognosis and immunotherapy outcomes of STAD patients. The survival of patients in the low-risk group was greatly prolonged, and the patients may benefit more from immunotherapy.