生物信息学分析鉴定TNFRSF1A是脓毒性肝损伤的生物标志物。

IF 2.1 4区 生物学 Q4 GENETICS & HEREDITY
Genetics research Pub Date : 2022-10-15 eCollection Date: 2022-01-01 DOI:10.1155/2022/1493744
Shangxun Zhou, Wei Zhao, Junjie Li, Yang Huang, Jing Yang, Qianmei Wang, Yunyun Xu, Chujun Duan, Yutong Wang, Wen Yin
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引用次数: 0

摘要

脓毒症是一种死亡率高的重症疾病,肝损伤是脓毒症发病率和死亡率的独立危险因素。我们分析了共差异表达基因(co- differential expressed genes, co-DEGs),以探索脓毒症相关肝损伤的潜在生物标志物和治疗靶点。从gene expression Omnibus (GEO)下载三个基因表达数据集(GSE60088、GSE23767和GSE71530)。使用GEO2R筛选脓毒症和对照样本之间的deg。使用CTD数据库分析这些deg与感染和肝脏疾病的关系。通过GO功能分析、KEGG通路富集分析和蛋白-蛋白相互作用(PPI)网络分析来阐明DEGs的潜在分子机制。再次分析GSE60088不同组织的deg,获得脓毒性肝损伤的特异性标志物。采用盲肠结扎穿刺法(CLP)建立小鼠脓毒症模型,采用Western blot方法分析肝、肺、肾组织中特异性标志物的表达。在这里,我们在三个数据集中鉴定了21个deg,包含8个中心基因,所有这些基因在肝脏疾病中的推断得分都高于细菌感染。其中,只有TNFRSF1A具有肝脏特异性差异表达。TNFRSF1A也被证实在小鼠脓毒性肝组织中特异性减少。因此,TNFRSF1A可能作为脓毒性肝损伤的潜在生物标志物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Bioinformatics Analysis Identifies TNFRSF1A as a Biomarker of Liver Injury in Sepsis TNFRSF1A is a Biomarker for Septic Liver Injury.

Bioinformatics Analysis Identifies TNFRSF1A as a Biomarker of Liver Injury in Sepsis TNFRSF1A is a Biomarker for Septic Liver Injury.

Bioinformatics Analysis Identifies TNFRSF1A as a Biomarker of Liver Injury in Sepsis TNFRSF1A is a Biomarker for Septic Liver Injury.

Bioinformatics Analysis Identifies TNFRSF1A as a Biomarker of Liver Injury in Sepsis TNFRSF1A is a Biomarker for Septic Liver Injury.

Sepsis is a severe disease with high mortality, and liver injury is an independent risk factor for sepsis morbidity and mortality. We analyzed co-differentially expressed genes (co-DEGs) to explore potential biomarkers and therapeutic targets for sepsis-related liver injury. Three gene expression datasets (GSE60088, GSE23767, and GSE71530) were downloaded from the Gene Expression Omnibus (GEO). DEGs were screened between sepsis and control samples using GEO2R. The association of these DEGs with infection and liver disease was analyzed by using the CTD database. GO functional analysis, KEGG pathway enrichment analysis, and protein-protein interaction (PPI) network analysis were performed to elucidate the potential molecular mechanism of DEGs. DEGs of different tissues in GSE60088 were analyzed again to obtain specific markers of septic liver injury. Mouse model of sepsis was also established by cecal ligation and puncture (CLP), and the expression of specific markers in liver, lung, and kidney tissues was analyzed using Western blot. Here, we identified 21 DEGs in three datasets with 8 hub genes, all of which showed higher inference scores in liver diseases than bacterial infections. Among them, only TNFRSF1A had a liver-specific differential expression. TNFRSF1A was also confirmed to be specifically reduced in septic liver tissues in mice. Therefore, TNFRSF1A may serve as a potential biomarker for septic liver injury.

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来源期刊
Genetics research
Genetics research 生物-遗传学
自引率
6.70%
发文量
74
审稿时长
>12 weeks
期刊介绍: Genetics Research is a key forum for original research on all aspects of human and animal genetics, reporting key findings on genomes, genes, mutations and molecular interactions, extending out to developmental, evolutionary, and population genetics as well as ethical, legal and social aspects. Our aim is to lead to a better understanding of genetic processes in health and disease. The journal focuses on the use of new technologies, such as next generation sequencing together with bioinformatics analysis, to produce increasingly detailed views of how genes function in tissues and how these genes perform, individually or collectively, in normal development and disease aetiology. The journal publishes original work, review articles, short papers, computational studies, and novel methods and techniques in research covering humans and well-established genetic organisms. Key subject areas include medical genetics, genomics, human evolutionary and population genetics, bioinformatics, genetics of complex traits, molecular and developmental genetics, Evo-Devo, quantitative and statistical genetics, behavioural genetics and environmental genetics. The breadth and quality of research make the journal an invaluable resource for medical geneticists, molecular biologists, bioinformaticians and researchers involved in genetic basis of diseases, evolutionary and developmental studies.
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