保守的宿主-病原体PPIs。基于全球保守的种间细菌PPIs的保守宿主-病原体相互作用组衍生了假结核杆菌、白喉杆菌、结核分枝杆菌、溃疡杆菌、鼠疫杆菌和大肠杆菌的新靶点,这些靶点被胡椒甜菜化合物靶向。

IF 1.4
Debmalya Barh, Krishnakant Gupta, Neha Jain, Gourav Khatri, Nidia León-Sicairos, Adrian Canizalez-Roman, Sandeep Tiwari, Ankit Verma, Sachin Rahangdale, Syed Shah Hassan, Anderson Rodrigues dos Santos, Amjad Ali, Luis Carlos Guimarães, Rommel Thiago Jucá Ramos, Pratap Devarapalli, Neha Barve, Marriam Bakhtiar, Ranjith Kumavath, Preetam Ghosh, Anderson Miyoshi, Artur Silva, Anil Kumar, Amarendra Narayan Misra, Kenneth Blum, Jan Baumbach, Vasco Azevedo
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引用次数: 25

摘要

尽管人们已经尝试揭示蛋白质-蛋白质和宿主-病原体之间的相互作用,这些相互作用是基于对各种生物体中重要生物学事件和发病机制的分子见解,但这些努力尚未在假性淋巴结炎(CLA)的病原体假结核棒状杆菌(Cp)中报道。在这项研究中,我们首次使用计算方法开发了四种Cp菌株(Cp FRC41, Cp 316, Cp 3/99-5和Cp P54B96)的共同保守种内蛋白质-蛋白质相互作用(PPI)网络,然后利用多种病原体(鼠疫杆菌,结核分枝杆菌,白喉杆菌,溃疡杆菌,大肠杆菌和所有四种Cp菌株)和大肠杆菌中的保守蛋白开发了共同的保守种间细菌PPI。此外,利用常见的保守种间细菌相互作用蛋白构建了一个考虑人类、山羊、绵羊、牛和马等宿主的保守宿主-病原体相互作用(HP-PPI)网络。HP-PPI网络得到了验证,醋酸激酶(Ack)被确定为一个新的广谱靶标。头孢替弗、青霉素和两种从槟榔中提取的天然化合物被预测可以抑制Ack活性。胡椒槟榔中的一种化合物,被发现能抑制大肠杆菌O157:H7的生长,类似于青霉素这些槟榔化合物的靶特异性,它们对其他研究病原体的影响,以及其他计算机结果目前正在得到验证,结果是有希望的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Conserved host-pathogen PPIs. Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by Piper betel compounds.

Although attempts have been made to unveil protein-protein and host-pathogen interactions based on molecular insights of important biological events and pathogenesis in various organisms, these efforts have not yet been reported in Corynebacterium pseudotuberculosis (Cp), the causative agent of Caseous Lymphadenitis (CLA). In this study, we used computational approaches to develop common conserved intra-species protein-protein interaction (PPI) networks first time for four Cp strains (Cp FRC41, Cp 316, Cp 3/99-5, and Cp P54B96) followed by development of a common conserved inter-species bacterial PPI using conserved proteins in multiple pathogens (Y. pestis, M. tuberculosis, C. diphtheriae, C. ulcerans, E. coli, and all four Cp strains) and E. Coli based experimentally validated PPI data. Furthermore, the interacting proteins in the common conserved inter-species bacterial PPI were used to generate a conserved host-pathogen interaction (HP-PPI) network considering human, goat, sheep, bovine, and horse as hosts. The HP-PPI network was validated, and acetate kinase (Ack) was identified as a novel broad spectrum target. Ceftiofur, penicillin, and two natural compounds derived from Piper betel were predicted to inhibit Ack activity. One of these Piper betel compounds found to inhibit E. coli O157:H7 growth similar to penicillin. The target specificity of these betel compounds, their effects on other studied pathogens, and other in silico results are currently being validated and the results are promising.

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