一种新的免疫相关lncRNA信号和胃癌免疫景观的构建及综合预后分析。

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
International Journal of Genomics Pub Date : 2022-01-17 eCollection Date: 2022-01-01 DOI:10.1155/2022/4105280
Xiaolong Liang, Lang Zha, Gangfeng Yu, Xiong Guo, Chuan Qin, Anqi Cheng, Ziwei Wang
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引用次数: 3

摘要

胃癌是一种死亡率高、预后差的恶性肿瘤。免疫疗法,特别是免疫检查点抑制剂(ICI),广泛应用于各种肿瘤,但GC患者并没有从免疫疗法中获益。因此,迫切需要有效的预测性生物标志物来帮助胃癌患者实现免疫治疗的益处。最近的研究表明,长链非编码rna (lncRNAs)可以作为多种肿瘤免疫景观的生物标志物。在本研究中,我们构建了一种新的免疫相关lncRNA (irlncRNA)风险模型来预测GC患者的生存和免疫景观。首先,我们从癌症基因组图谱(TCGA)的RNA-Seq数据中鉴定出差异表达的irlncRNAs (DEirlncRNAs)。通过使用多种算法,我们构建了包含11对DEirlncRNA的风险模型。然后我们测试了风险模型的准确性,表明风险模型在预测GC患者预后方面具有良好的效率。进一步使用内部验证集来验证风险模型的有效性。此外,我们的风险模型在预测肿瘤免疫浸润状态、患者免疫检查点状态和免疫治疗评分方面具有较好的性能。总之,我们的风险模型可以为胃癌的预后和免疫治疗策略提供见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Construction and Comprehensive Prognostic Analysis of a Novel Immune-Related lncRNA Signature and Immune Landscape in Gastric Cancer.

Construction and Comprehensive Prognostic Analysis of a Novel Immune-Related lncRNA Signature and Immune Landscape in Gastric Cancer.

Construction and Comprehensive Prognostic Analysis of a Novel Immune-Related lncRNA Signature and Immune Landscape in Gastric Cancer.

Construction and Comprehensive Prognostic Analysis of a Novel Immune-Related lncRNA Signature and Immune Landscape in Gastric Cancer.

Gastric cancer (GC) is a malignant tumor with high mortality and poor prognosis. Immunotherapies, especially immune checkpoint inhibitors (ICI), are widely used in various tumors, but patients with GC do not benefit much from immunotherapies. Therefore, effective predictive biomarkers are urgently needed for GC patients to realize the benefits of immunotherapy. Recent studies have indicated that long noncoding RNAs (lncRNAs) could be used as biomarkers in the immune landscape of multiple tumors. In this study, we constructed a novel immune-related lncRNA (irlncRNA) risk model to predict the survival and immune landscape of GC patients. First, we identified differentially expressed irlncRNAs (DEirlncRNAs) from RNA-Seq data of The Cancer Genome Atlas (TCGA). By using various algorithms, we constructed a risk model with 11 DEirlncRNA pairs. We then tested the accuracy of the risk model, demonstrating that the risk model has good efficiency in predicting the prognosis of GC patients. Inner validation sets were further used to confirm the effectiveness of the risk model. In addition, our risk model has a preferable performance in predicting the immune infiltration status of tumors, immune checkpoint status of the patients, and immunotherapy score. In conclusion, our risk model may provide insights into the prognosis of and immunotherapy strategy for GC.

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来源期刊
International Journal of Genomics
International Journal of Genomics BIOCHEMISTRY & MOLECULAR BIOLOGY-BIOTECHNOLOGY & APPLIED MICROBIOLOGY
CiteScore
5.40
自引率
0.00%
发文量
33
审稿时长
17 weeks
期刊介绍: International Journal of Genomics is a peer-reviewed, Open Access journal that publishes research articles as well as review articles in all areas of genome-scale analysis. Topics covered by the journal include, but are not limited to: bioinformatics, clinical genomics, disease genomics, epigenomics, evolutionary genomics, functional genomics, genome engineering, and synthetic genomics.
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