充电你的脂肪:CHARMM36参数中性脂三酰基甘油和二酰基甘油。

IF 2.4 Q3 BIOPHYSICS
Pablo Campomanes, Janak Prabhu, Valeria Zoni, Stefano Vanni
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引用次数: 6

摘要

中性脂(NLs)是一类丰富的细胞脂。它们的特点是在其结构中完全缺乏带电的化学基团,因此,它们在细胞内脂质储存中起主要作用。携带甘油主链的NLs,如三酰基甘油(TGs)和二酰基甘油(dg),也参与细胞磷脂的生物合成途径,它们最近成为通过原子分子动力学模拟进行大量结构研究的主题。然而,根据所使用的原子力场的性质,观察到NLs的物理化学行为的相互矛盾的结果。在这里,我们表明,由于甘油-酯区过度亲水性,目前磷脂衍生的dg和tg的CHARMM36参数不能充分再现这些NLs的界面特性。通过遵循charmm36一致的参数化策略,我们为TGs和dg开发了改进的参数,这些参数与基于截止点和粒子网格的Ewald方案兼容,用于处理Lennard-Jones相互作用。我们表明,我们改进的参数可以再现NLs的界面性质及其在更复杂的脂质组装中的行为。我们讨论了在细胞内脂质储存和NLs细胞活性的背景下我们的发现的含义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol.

Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol.

Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol.

Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol.

Neutral lipids (NLs) are an abundant class of cellular lipids. They are characterized by the total lack of charged chemical groups in their structure, and, as a consequence, they play a major role in intracellular lipid storage. NLs that carry a glycerol backbone, such as triacylglycerols (TGs) and diacylglycerols (DGs), are also involved in the biosynthetic pathway of cellular phospholipids, and they have recently been the subject of numerous structural investigations by means of atomistic molecular dynamics simulations. However, conflicting results on the physicochemical behavior of NLs were observed depending on the nature of the atomistic force field used. Here, we show that current phospholipid-derived CHARMM36 parameters for DGs and TGs cannot adequately reproduce interfacial properties of these NLs because of excessive hydrophilicity at the glycerol-ester region. By following a CHARMM36-consistent parameterization strategy, we develop improved parameters for both TGs and DGs that are compatible with both cutoff-based and particle mesh Ewald schemes for the treatment of Lennard-Jones interactions. We show that our improved parameters can reproduce interfacial properties of NLs and their behavior in more complex lipid assemblies. We discuss the implications of our findings in the context of intracellular lipid storage and NLs' cellular activity.

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来源期刊
Biophysical reports
Biophysical reports Biophysics
CiteScore
2.40
自引率
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审稿时长
75 days
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