GoldBricks:一种改进的克隆策略,结合了Golden Gate和BioBricks的特点,以提高效率和可用性。

IF 2.6 Q2 BIOCHEMICAL RESEARCH METHODS
Synthetic biology (Oxford, England) Pub Date : 2021-11-10 eCollection Date: 2021-01-01 DOI:10.1093/synbio/ysab032
Vishalsingh R Chaudhari, Maureen R Hanson
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引用次数: 2

摘要

随着表达研究的复杂性和特征序列的不断增加,组合克隆已成为一种普遍的必要性。像BioBricks和Golden Gate这样的技术旨在标准化和加快克隆大型结构体的过程,同时实现资源共享。BioBricks格式提供了一种简化和灵活的方法,通过紧凑的库和有用的中间体进行无尽的组装,但这是一个缓慢的过程,在一个循环中只连接两个部分。Golden Gate通过使用IIS型酶提高了速度,并将几个部分连接到一个循环中,但需要更大的零件库,并且在多基因格式中物流效率低下。我们在这里提出了一种方法,通过结合这些技术的特性来改进它们。通过使用像BioBricks这样的格式的Type IIS酶,我们实现了更快、更高效的组装,减少了疤痕,其执行速度与Golden Gate相似,但显著减少了库的大小和用户输入。此外,这种方法可以更快地组装操作符风格的结构,这是在Golden Gate中需要广泛解决的一个特性。我们的格式允许这样的包含,从而实现更快、更有效的汇编。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

GoldBricks: an improved cloning strategy that combines features of Golden Gate and BioBricks for better efficiency and usability.

GoldBricks: an improved cloning strategy that combines features of Golden Gate and BioBricks for better efficiency and usability.

GoldBricks: an improved cloning strategy that combines features of Golden Gate and BioBricks for better efficiency and usability.

GoldBricks: an improved cloning strategy that combines features of Golden Gate and BioBricks for better efficiency and usability.

With increasing complexity of expression studies and the repertoire of characterized sequences, combinatorial cloning has become a common necessity. Techniques like BioBricks and Golden Gate aim to standardize and speed up the process of cloning large constructs while enabling sharing of resources. The BioBricks format provides a simplified and flexible approach to endless assembly with a compact library and useful intermediates but is a slow process, joining only two parts in a cycle. Golden Gate improves upon the speed with use of Type IIS enzymes and joins several parts in a cycle but requires a larger library of parts and logistical inefficiencies scale up significantly in the multigene format. We present here a method that provides improvement over these techniques by combining their features. By using Type IIS enzymes in a format like BioBricks, we have enabled a faster and efficient assembly with reduced scarring, which performs at a similarly fast pace as Golden Gate, but significantly reduces library size and user input. Additionally, this method enables faster assembly of operon-style constructs, a feature requiring extensive workaround in Golden Gate. Our format allows such inclusions resulting in faster and more efficient assembly.

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