Bruna Memari Trava, Rogério Pincela Mateus, Luciana Paes de Barros Machado, Lilian Madi-Ravazzi
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The highest mean observed heterozygosity -<i>H</i> <sub>O</sub> was estimated in samples from the largest collection areas, and the lowest <i>H</i> <sub>O</sub> was from a population where fire events are common. A low molecular variation, around 3% among populations and negative among groups, an absence of genetic and geographic correlations and a moderate genetic differentiation -<i>F</i> <sub>ST</sub> = 0.0663 -indicated that <i>D. sturtevanti</i> is not strongly structured. Besides no overall genetic and geographic distance correlation, the pair of closest geographically populations Matão and Nova Granada showed the lower differentiation through <i>F</i> <sub>ST</sub>, DC and a Neighbor Joining tree. Ribeirão da Ilha -RDI, an isolated insular population, was the most differentiated according to <i>F</i> <sub>ST</sub>, DC and a cluster-based Bayesian analysis. The isolation of RDI that resulted in significant divergence could be ancient, because of sea level regressions/transgressions, or more recently via founder effect/genetic drift by anthropic action carrying <i>D. sturtevanti</i> hosts from continent to island. This work is important for understanding the genetic variability distribution of a Neotropical forest-dwelling <i>Drosophila</i> species using for the first time, a wide population distribution approach.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2021-08-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8685343/pdf/zoolstud-60-046.pdf","citationCount":"0","resultStr":"{\"title\":\"Moderate Population Structure in <i>Drosophila sturtevanti</i> from the South American Atlantic Forest Biome.\",\"authors\":\"Bruna Memari Trava, Rogério Pincela Mateus, Luciana Paes de Barros Machado, Lilian Madi-Ravazzi\",\"doi\":\"10.6620/ZS.2021.60-46\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Drosophila sturtevanti</i> is a widely distributed Neotropical species. In South America, it is abundant and adapted to different phytophysiognomies of the Atlantic Forest biome. Reproductive, chromosomal and enzymatic studies have indicated the existence of a differentiation among <i>D. sturtevanti</i> populations. In this work, the level of genetic diversity and the population genetic structure were analyzed using four population groupings. One hundred and twenty-six <i>D. sturtevanti</i> males collected from nine forest fragments were analyzed for 11 species-specific microsatellite loci. A total of 109 alleles, ranging from 2 to 16 alleles per locus, were detected. The highest mean observed heterozygosity -<i>H</i> <sub>O</sub> was estimated in samples from the largest collection areas, and the lowest <i>H</i> <sub>O</sub> was from a population where fire events are common. A low molecular variation, around 3% among populations and negative among groups, an absence of genetic and geographic correlations and a moderate genetic differentiation -<i>F</i> <sub>ST</sub> = 0.0663 -indicated that <i>D. sturtevanti</i> is not strongly structured. Besides no overall genetic and geographic distance correlation, the pair of closest geographically populations Matão and Nova Granada showed the lower differentiation through <i>F</i> <sub>ST</sub>, DC and a Neighbor Joining tree. Ribeirão da Ilha -RDI, an isolated insular population, was the most differentiated according to <i>F</i> <sub>ST</sub>, DC and a cluster-based Bayesian analysis. The isolation of RDI that resulted in significant divergence could be ancient, because of sea level regressions/transgressions, or more recently via founder effect/genetic drift by anthropic action carrying <i>D. sturtevanti</i> hosts from continent to island. 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引用次数: 0
摘要
sturtevanti果蝇是一个广泛分布的新热带物种。在南美洲,它是丰富的,并适应不同的植物地貌的大西洋森林生物群系。生殖、染色体和酶的研究表明,在杜鹃种群之间存在分化。本文采用4个种群类群对其遗传多样性水平和种群遗传结构进行了分析。对从9个森林片段中采集的126只雄性沙蚕进行了11个物种特异性微卫星位点的分析。共检测到109个等位基因,每个位点有2 ~ 16个等位基因。在最大的采集区域的样本中,估计最高的平均观察杂合性-H - O,最低的H - O来自火灾事件常见的种群。低分子变异(居群间约3%,居群间为负)、缺乏遗传和地理相关性以及中等遗传分化(f ST = 0.0663)表明D. sturtevanti的结构不强。除了总体遗传和地理距离不相关外,通过fst、DC和邻居联结树分析,mat o和Nova Granada这对地理上最接近的群体分化程度较低。根据fst、DC和基于聚类的贝叶斯分析,ribeir o da Ilha -RDI是一个孤立的岛屿种群,分化程度最高。RDI的分离导致了显著的分化,这可能是由于海平面回归/海侵造成的,也可能是由于人类活动将D. sturtevanti宿主从大陆带到岛屿的奠基人效应/遗传漂变造成的。这项工作对了解新热带森林生活的果蝇物种的遗传变异分布具有重要意义,这是第一次使用广泛的种群分布方法。
Moderate Population Structure in Drosophila sturtevanti from the South American Atlantic Forest Biome.
Drosophila sturtevanti is a widely distributed Neotropical species. In South America, it is abundant and adapted to different phytophysiognomies of the Atlantic Forest biome. Reproductive, chromosomal and enzymatic studies have indicated the existence of a differentiation among D. sturtevanti populations. In this work, the level of genetic diversity and the population genetic structure were analyzed using four population groupings. One hundred and twenty-six D. sturtevanti males collected from nine forest fragments were analyzed for 11 species-specific microsatellite loci. A total of 109 alleles, ranging from 2 to 16 alleles per locus, were detected. The highest mean observed heterozygosity -HO was estimated in samples from the largest collection areas, and the lowest HO was from a population where fire events are common. A low molecular variation, around 3% among populations and negative among groups, an absence of genetic and geographic correlations and a moderate genetic differentiation -FST = 0.0663 -indicated that D. sturtevanti is not strongly structured. Besides no overall genetic and geographic distance correlation, the pair of closest geographically populations Matão and Nova Granada showed the lower differentiation through FST, DC and a Neighbor Joining tree. Ribeirão da Ilha -RDI, an isolated insular population, was the most differentiated according to FST, DC and a cluster-based Bayesian analysis. The isolation of RDI that resulted in significant divergence could be ancient, because of sea level regressions/transgressions, or more recently via founder effect/genetic drift by anthropic action carrying D. sturtevanti hosts from continent to island. This work is important for understanding the genetic variability distribution of a Neotropical forest-dwelling Drosophila species using for the first time, a wide population distribution approach.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
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