Jonathan Foox, Daniela Bezdan, Priyanka Vijay, Kylie Getz, Kamolwat Ratanachai, Justin W Davis, Keith Booher, Xiaojing Yang, Cem Meydan, Christopher E Mason
{"title":"表观遗传法医学用于嫌疑人识别和年龄预测。","authors":"Jonathan Foox, Daniela Bezdan, Priyanka Vijay, Kylie Getz, Kamolwat Ratanachai, Justin W Davis, Keith Booher, Xiaojing Yang, Cem Meydan, Christopher E Mason","doi":"10.1089/forensic.2021.0005","DOIUrl":null,"url":null,"abstract":"<p><p><b>Background:</b> Genetic testing at crime scenes is an instrumental molecular technique to identify or eliminate suspects, as well as to overturn wrongful convictions. Yet, genotyping alone cannot reveal the age of a sample, which could help advance the utility of crime scene samples for suspect identification. The distribution of cytosine methylation within a DNA sample can be leveraged to determine the epigenetic age of someone's blood. <b>Methodology:</b> We sought to demonstrate the ability of DNA methylation markers to accurately discern the age of blood spots from an actual crime scene, a \"mock\" crime scene, and also from a tube of blood stored in ethylenediaminetetraacetic acid for >20 years. This was achieved by quantifying methylation within known age-associated genetic loci across each DNA sample. We observed a strong linear coefficient (0.91) and high overall correlation (<i>R</i> <sup>2</sup> = 0.963) between the known age of a sample and the predicted age. <b>Conclusion:</b> We show that novel methods for targeted methylation and low-input whole-genome bisulfite sequencing can enable a novel and improved forensic profile of a crime scene that discerns not only who was present at the crime, but also their age. Finally, we use this model to discern the age and provenance of a blood sample that was used in a criminal investigation.</p>","PeriodicalId":93434,"journal":{"name":"Forensic genomics","volume":"1 3","pages":"83-86"},"PeriodicalIF":0.0000,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8596498/pdf/forensic.2021.0005.pdf","citationCount":"1","resultStr":"{\"title\":\"Epigenetic Forensics for Suspect Identification and Age Prediction.\",\"authors\":\"Jonathan Foox, Daniela Bezdan, Priyanka Vijay, Kylie Getz, Kamolwat Ratanachai, Justin W Davis, Keith Booher, Xiaojing Yang, Cem Meydan, Christopher E Mason\",\"doi\":\"10.1089/forensic.2021.0005\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b>Background:</b> Genetic testing at crime scenes is an instrumental molecular technique to identify or eliminate suspects, as well as to overturn wrongful convictions. Yet, genotyping alone cannot reveal the age of a sample, which could help advance the utility of crime scene samples for suspect identification. The distribution of cytosine methylation within a DNA sample can be leveraged to determine the epigenetic age of someone's blood. <b>Methodology:</b> We sought to demonstrate the ability of DNA methylation markers to accurately discern the age of blood spots from an actual crime scene, a \\\"mock\\\" crime scene, and also from a tube of blood stored in ethylenediaminetetraacetic acid for >20 years. This was achieved by quantifying methylation within known age-associated genetic loci across each DNA sample. We observed a strong linear coefficient (0.91) and high overall correlation (<i>R</i> <sup>2</sup> = 0.963) between the known age of a sample and the predicted age. <b>Conclusion:</b> We show that novel methods for targeted methylation and low-input whole-genome bisulfite sequencing can enable a novel and improved forensic profile of a crime scene that discerns not only who was present at the crime, but also their age. Finally, we use this model to discern the age and provenance of a blood sample that was used in a criminal investigation.</p>\",\"PeriodicalId\":93434,\"journal\":{\"name\":\"Forensic genomics\",\"volume\":\"1 3\",\"pages\":\"83-86\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2021-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8596498/pdf/forensic.2021.0005.pdf\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Forensic genomics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1089/forensic.2021.0005\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2021/9/15 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Forensic genomics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1089/forensic.2021.0005","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/9/15 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
Epigenetic Forensics for Suspect Identification and Age Prediction.
Background: Genetic testing at crime scenes is an instrumental molecular technique to identify or eliminate suspects, as well as to overturn wrongful convictions. Yet, genotyping alone cannot reveal the age of a sample, which could help advance the utility of crime scene samples for suspect identification. The distribution of cytosine methylation within a DNA sample can be leveraged to determine the epigenetic age of someone's blood. Methodology: We sought to demonstrate the ability of DNA methylation markers to accurately discern the age of blood spots from an actual crime scene, a "mock" crime scene, and also from a tube of blood stored in ethylenediaminetetraacetic acid for >20 years. This was achieved by quantifying methylation within known age-associated genetic loci across each DNA sample. We observed a strong linear coefficient (0.91) and high overall correlation (R2 = 0.963) between the known age of a sample and the predicted age. Conclusion: We show that novel methods for targeted methylation and low-input whole-genome bisulfite sequencing can enable a novel and improved forensic profile of a crime scene that discerns not only who was present at the crime, but also their age. Finally, we use this model to discern the age and provenance of a blood sample that was used in a criminal investigation.