两步级联中的信息传递:激活和抑制的相互作用。

IF 1.3 4区 生物学 Q3 BIOLOGY
Theory in Biosciences Pub Date : 2021-10-01 Epub Date: 2021-10-05 DOI:10.1007/s12064-021-00357-3
Tuhin Subhra Roy, Mintu Nandi, Ayan Biswas, Pinaki Chaudhury, Suman K Banik
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引用次数: 4

摘要

我们提出了一种信息理论形式来研究具有增加输入人口的两步级联模型的四种结构变体中的信号转导。我们的研究结果根据激活和抑制对互信息、净协同作用和信噪比的影响将这四种类型分为两类。利用高斯框架和线性噪声近似,我们推导了这些指标的解析表达式,以建立它们在生化参数方面的潜在关系。我们还通过随机模拟验证了我们的近似。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Information transmission in a two-step cascade: interplay of activation and repression.

We present an information-theoretic formalism to study signal transduction in four architectural variants of a model two-step cascade with increasing input population. Our results categorize these four types into two classes depending upon the effect of activation and repression on mutual information, net synergy, and signal-to-noise ratio. Using the Gaussian framework and linear noise approximation, we derive the analytic expressions for these metrics to establish their underlying relationships in terms of the biochemical parameters. We also verify our approximations through stochastic simulations.

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来源期刊
Theory in Biosciences
Theory in Biosciences 生物-生物学
CiteScore
2.70
自引率
9.10%
发文量
21
审稿时长
3 months
期刊介绍: Theory in Biosciences focuses on new concepts in theoretical biology. It also includes analytical and modelling approaches as well as philosophical and historical issues. Central topics are: Artificial Life; Bioinformatics with a focus on novel methods, phenomena, and interpretations; Bioinspired Modeling; Complexity, Robustness, and Resilience; Embodied Cognition; Evolutionary Biology; Evo-Devo; Game Theoretic Modeling; Genetics; History of Biology; Language Evolution; Mathematical Biology; Origin of Life; Philosophy of Biology; Population Biology; Systems Biology; Theoretical Ecology; Theoretical Molecular Biology; Theoretical Neuroscience & Cognition.
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