组蛋白甲基转移酶在胃癌研究中的应用

IF 2.4 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Cancer Informatics Pub Date : 2021-08-14 eCollection Date: 2021-01-01 DOI:10.1177/11769351211039862
Dafne Alejandra Reyes, Victor Manuel Saure Sarría, Marcela Salazar-Viedma, Vívian D'Afonseca
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引用次数: 5

摘要

胃癌是世界上最常见的肿瘤之一。胃腺癌是一种异质性肿瘤,给患者的预后预测和临床治疗带来了困难。利用基因多态性、体细胞拷贝数改变(SCNA)和异常组蛋白甲基化的知识,开发了一些胃癌的诊断检测方法。最后一个事件是发生在染色质水平上的翻译后修饰,是在包括胃腺癌在内的几种肿瘤中看到的重要表观遗传改变。组蛋白甲基转移酶(HMT)是负责组蛋白尾部特定氨基酸残基甲基化的蛋白质。这里介绍了几个可能与GC过程相关的hmt。我们使用440例胃腺癌患者的公开数据。我们评估了上述样品中hmt的SCNAs、突变和基因表达水平的变化。结果,在胃腺癌样本中鉴定出10个改变最多的hmt(高达30%),它们是PRDM14、PRDM9、SUV39H2、NSD2、SMYD5、SETDB1、PRDM12、SUV39H1、NSD3和EHMT2基因。PRDM9基因是研究数据集中突变和扩增最多的hmt之一。PRDM14在79%的样本中下调,SUV39H2基因在复发/进展的疾病患者中下调表达。在许多癌症中,有几个hmt发生了改变。生成癌症相关基因改变的遗传图谱对于提高对肿瘤发生事件的理解,并为癌症控制提供新的诊断和预后工具具有重要意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Histone Methyltransferases Useful in Gastric Cancer Research.

Histone Methyltransferases Useful in Gastric Cancer Research.

Histone Methyltransferases Useful in Gastric Cancer Research.

Histone Methyltransferases Useful in Gastric Cancer Research.

Gastric cancer (GC) is one of the most frequent tumors in the world. Stomach adenocarcinoma is a heterogeneous tumor, turning the prognosis prediction and patients' clinical management difficult. Some diagnosis tests for GC are been development using knowledge based in polymorphisms, somatic copy number alteration (SCNA) and aberrant histone methylation. This last event, a posttranslational modification that occurs at the chromatin level, is an important epigenetic alteration seen in several tumors including stomach adenocarcinoma. Histone methyltransferases (HMT) are the proteins responsible for the methylation in specific amino acids residues of histones tails. Here, were presented several HMTs that could be relating to GC process. We use public data from 440 patients with stomach adenocarcinoma. We evaluated the alterations as SCNAs, mutations, and genes expression level of HMTs in these aforementioned samples. As results, it was identified the 10 HMTs most altered (up to 30%) in stomach adenocarcinoma samples, which are the PRDM14, PRDM9, SUV39H2, NSD2, SMYD5, SETDB1, PRDM12, SUV39H1, NSD3, and EHMT2 genes. The PRDM9 gene is among most mutated and amplified HMTs within the data set studied. PRDM14 is downregulated in 79% of the samples and the SUV39H2 gene is down expressed in patients with recurred/progressed disease. Several HMTs are altered in many cancers. It is important to generate a genetic atlas of alterations of cancer-related genes to improve the understanding of tumorigenesis events and to propose novel tools of diagnosis and prognosis for the cancer control.

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来源期刊
Cancer Informatics
Cancer Informatics Medicine-Oncology
CiteScore
3.00
自引率
5.00%
发文量
30
审稿时长
8 weeks
期刊介绍: The field of cancer research relies on advances in many other disciplines, including omics technology, mass spectrometry, radio imaging, computer science, and biostatistics. Cancer Informatics provides open access to peer-reviewed high-quality manuscripts reporting bioinformatics analysis of molecular genetics and/or clinical data pertaining to cancer, emphasizing the use of machine learning, artificial intelligence, statistical algorithms, advanced imaging techniques, data visualization, and high-throughput technologies. As the leading journal dedicated exclusively to the report of the use of computational methods in cancer research and practice, Cancer Informatics leverages methodological improvements in systems biology, genomics, proteomics, metabolomics, and molecular biochemistry into the fields of cancer detection, treatment, classification, risk-prediction, prevention, outcome, and modeling.
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