与糖尿病和肥胖症相关靶点的天南星植物成分的硅学分析。

In Silico Pharmacology Pub Date : 2021-01-02 eCollection Date: 2021-01-01 DOI:10.1007/s40203-020-00063-w
Bijendra K Mandar, Pukar Khanal, B M Patil, Yadu Nandan Dey, Ismail Pasha
{"title":"与糖尿病和肥胖症相关靶点的天南星植物成分的硅学分析。","authors":"Bijendra K Mandar, Pukar Khanal, B M Patil, Yadu Nandan Dey, Ismail Pasha","doi":"10.1007/s40203-020-00063-w","DOIUrl":null,"url":null,"abstract":"<p><p>Traditionally, <i>Tinospora cordifolia</i> is commonly used in the treatment of diabetes and obesity; has been evaluated for their anti-diabetic and anti-obese potency in experimental animal models. However, the binding affinity of multiple bioactives with various proteins involved in the pathogenesis of diabetes and obesity has not been reported yet. Hence, the present study aimed to assess the binding affinity of multiple bioactives from <i>T. cordifolia</i> with various targets involved in the pathogenesis of diabetes and obesity. The ligands and targets were retrieved from the PubChem and Protein Data Bank respectively and docked using autodock4.0. Druglikeness and absorption, distribution, metabolism, excretion, and toxicity profile were predicted using Molsoft and admetSAR1 respectively. The multiple bioactives from <i>T. cordifolia</i> were identified to interact with multiple proteins involved in the pathogenesis of diabetes/obesity, i.e., isocolumbin (- 9 kcal/mol) with adiponectin (PDB: 4DOU), β-sitosterol (- 10.9 kcal/mol) with cholesteryl ester transfer protein (PDB: 2OBD), tinocordiside (- 6.9 kcal/mol) with lamin A/C (PDB: 3GEF), berberine (- 9.5 kcal/mol) with JNK1 (PDB:3ELJ), β-sitosterol & isocolumbin (- 10.1 kcal/mol) with peroxisome proliferator-activated receptor-γ (PDB:4CI5), berberine (- 7.5 kcal/mol) with suppressor of cytokine signaling 3 (PDB: 2BBU), isocolumbin (- 9.6 kcal/mol) with pancreatic α-amylase (PDB: 1B2Y), isocolumbin (- 9 kcal/mol) with α-glucosidase (PDB: 3TOP), and β-sitosterol (- 10.8 kcal/mol) with aldose reductase (PDB: 3RX2). Similarly, among the selected bioactives, tembetarine scored highest druglikeness score, i.e., 1.21. In contrast, isocolumbin scored lowest drug-likeness character i.e. - 0.52. The predicted result of phytochemicals from <i>T. cordifolia</i> for acute oral toxicity, rat acute toxicity, fish toxicity, drug-likeness score, and aqueous solubility showed the probability of lower side/adverse effects in human consumption. The study suggests processing for bioactives from <i>T. cordifolia</i> against diabetes and obesity via in-vitro and in-vivo approaches.</p>","PeriodicalId":13380,"journal":{"name":"In Silico Pharmacology","volume":" ","pages":"3"},"PeriodicalIF":0.0000,"publicationDate":"2021-01-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778662/pdf/40203_2020_Article_63.pdf","citationCount":"0","resultStr":"{\"title\":\"In silico analysis of phytoconstituents from <i>Tinospora cordifolia</i> with targets related to diabetes and obesity.\",\"authors\":\"Bijendra K Mandar, Pukar Khanal, B M Patil, Yadu Nandan Dey, Ismail Pasha\",\"doi\":\"10.1007/s40203-020-00063-w\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Traditionally, <i>Tinospora cordifolia</i> is commonly used in the treatment of diabetes and obesity; has been evaluated for their anti-diabetic and anti-obese potency in experimental animal models. However, the binding affinity of multiple bioactives with various proteins involved in the pathogenesis of diabetes and obesity has not been reported yet. Hence, the present study aimed to assess the binding affinity of multiple bioactives from <i>T. cordifolia</i> with various targets involved in the pathogenesis of diabetes and obesity. The ligands and targets were retrieved from the PubChem and Protein Data Bank respectively and docked using autodock4.0. Druglikeness and absorption, distribution, metabolism, excretion, and toxicity profile were predicted using Molsoft and admetSAR1 respectively. The multiple bioactives from <i>T. cordifolia</i> were identified to interact with multiple proteins involved in the pathogenesis of diabetes/obesity, i.e., isocolumbin (- 9 kcal/mol) with adiponectin (PDB: 4DOU), β-sitosterol (- 10.9 kcal/mol) with cholesteryl ester transfer protein (PDB: 2OBD), tinocordiside (- 6.9 kcal/mol) with lamin A/C (PDB: 3GEF), berberine (- 9.5 kcal/mol) with JNK1 (PDB:3ELJ), β-sitosterol & isocolumbin (- 10.1 kcal/mol) with peroxisome proliferator-activated receptor-γ (PDB:4CI5), berberine (- 7.5 kcal/mol) with suppressor of cytokine signaling 3 (PDB: 2BBU), isocolumbin (- 9.6 kcal/mol) with pancreatic α-amylase (PDB: 1B2Y), isocolumbin (- 9 kcal/mol) with α-glucosidase (PDB: 3TOP), and β-sitosterol (- 10.8 kcal/mol) with aldose reductase (PDB: 3RX2). Similarly, among the selected bioactives, tembetarine scored highest druglikeness score, i.e., 1.21. In contrast, isocolumbin scored lowest drug-likeness character i.e. - 0.52. The predicted result of phytochemicals from <i>T. cordifolia</i> for acute oral toxicity, rat acute toxicity, fish toxicity, drug-likeness score, and aqueous solubility showed the probability of lower side/adverse effects in human consumption. The study suggests processing for bioactives from <i>T. cordifolia</i> against diabetes and obesity via in-vitro and in-vivo approaches.</p>\",\"PeriodicalId\":13380,\"journal\":{\"name\":\"In Silico Pharmacology\",\"volume\":\" \",\"pages\":\"3\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2021-01-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778662/pdf/40203_2020_Article_63.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"In Silico Pharmacology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1007/s40203-020-00063-w\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2021/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"In Silico Pharmacology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/s40203-020-00063-w","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

传统上,天竺葵常用于治疗糖尿病和肥胖症;在实验动物模型中对其抗糖尿病和抗肥胖的功效进行了评估。然而,多种生物活性物质与涉及糖尿病和肥胖症发病机制的各种蛋白质的结合亲和力尚未见报道。因此,本研究旨在评估 T. cordifolia 的多种生物活性物质与糖尿病和肥胖症发病机制中涉及的各种靶点的结合亲和力。配体和靶标分别从 PubChem 和蛋白质数据库中检索,并使用 autodock4.0 进行对接。使用 Molsoft 和 admetSAR1 分别预测了药物的亲和性以及吸收、分布、代谢、排泄和毒性特征。经鉴定,从 T. cordifolia 中提取的多种生物活性物质可与涉及糖尿病/肥胖症发病机制的多种蛋白质相互作用,即isocolumbin(- 9 kcal/mol)与脂肪生成素(PDB:4DOU)相互作用,β-谷甾醇(- 10.9 kcal/mol)与胆固醇酯转移蛋白(PDB:2OBD)相互作用,tinocordiside(- 6.9 kcal/mol)与层粘连蛋白 A/C(PDB:3GEF)、小檗碱(- 9.5 kcal/mol)与 JNK1(PDB:3ELJ)、β-谷甾醇和异朱古力苷(- 10.1 kcal/mol)与过氧化物酶体增殖激活受体-γ(PDB:4CI5)作用,小檗碱(- 7.5 kcal/mol)与细胞因子信号转导抑制因子 3(PDB: 2BBU)作用,异小檗碱(- 9.6 kcal/mol)与胰腺α-淀粉酶(PDB:1B2Y)作用,异朱古力素(- 9 kcal/mol)与α-葡萄糖苷酶(PDB:3TOP)作用,β-谷甾醇(- 10.8 kcal/mol)与醛糖还原酶(PDB:3RX2)作用。同样,在所选的生物活性物质中,坦贝他林的药物亲和性得分最高,为 1.21。相比之下,异朱古力素的药物亲和性得分最低,为 -0.52。对 T. cordifolia 植物化学物质的急性口服毒性、大鼠急性毒性、鱼类毒性、药物亲和性得分和水溶性的预测结果表明,在人类食用中可能会产生较低的副作用/不良反应。该研究建议通过体外和体内方法加工虫草中的生物活性物质,以防治糖尿病和肥胖症。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
In silico analysis of phytoconstituents from Tinospora cordifolia with targets related to diabetes and obesity.

Traditionally, Tinospora cordifolia is commonly used in the treatment of diabetes and obesity; has been evaluated for their anti-diabetic and anti-obese potency in experimental animal models. However, the binding affinity of multiple bioactives with various proteins involved in the pathogenesis of diabetes and obesity has not been reported yet. Hence, the present study aimed to assess the binding affinity of multiple bioactives from T. cordifolia with various targets involved in the pathogenesis of diabetes and obesity. The ligands and targets were retrieved from the PubChem and Protein Data Bank respectively and docked using autodock4.0. Druglikeness and absorption, distribution, metabolism, excretion, and toxicity profile were predicted using Molsoft and admetSAR1 respectively. The multiple bioactives from T. cordifolia were identified to interact with multiple proteins involved in the pathogenesis of diabetes/obesity, i.e., isocolumbin (- 9 kcal/mol) with adiponectin (PDB: 4DOU), β-sitosterol (- 10.9 kcal/mol) with cholesteryl ester transfer protein (PDB: 2OBD), tinocordiside (- 6.9 kcal/mol) with lamin A/C (PDB: 3GEF), berberine (- 9.5 kcal/mol) with JNK1 (PDB:3ELJ), β-sitosterol & isocolumbin (- 10.1 kcal/mol) with peroxisome proliferator-activated receptor-γ (PDB:4CI5), berberine (- 7.5 kcal/mol) with suppressor of cytokine signaling 3 (PDB: 2BBU), isocolumbin (- 9.6 kcal/mol) with pancreatic α-amylase (PDB: 1B2Y), isocolumbin (- 9 kcal/mol) with α-glucosidase (PDB: 3TOP), and β-sitosterol (- 10.8 kcal/mol) with aldose reductase (PDB: 3RX2). Similarly, among the selected bioactives, tembetarine scored highest druglikeness score, i.e., 1.21. In contrast, isocolumbin scored lowest drug-likeness character i.e. - 0.52. The predicted result of phytochemicals from T. cordifolia for acute oral toxicity, rat acute toxicity, fish toxicity, drug-likeness score, and aqueous solubility showed the probability of lower side/adverse effects in human consumption. The study suggests processing for bioactives from T. cordifolia against diabetes and obesity via in-vitro and in-vivo approaches.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信