{"title":"分钟克里斯滕森菌DSM 22607的基因组分析草案,显示出功能未知的转运体同源物的异常扩展。","authors":"David A Coil, Guillaume Jospin, Jonathan A Eisen","doi":"10.7150/jgen.43162","DOIUrl":null,"url":null,"abstract":"<p><p><i>Christensenella minuta</i> was first formally described in 2012 as a member of a novel species, genus, and proposed family of Christensenellaceae. <i>C. minuta</i> was later shown in one study to be part of the most heritable taxonomic group in the human gut microbiome and to be enriched in people with low body mass index (BMI). Mouse work demonstrated that injection of cultured <i>C. minuta</i> into germ-free mice prevented the onset of obesity after a fecal transplant to the mice from high BMI individuals. Here we describe the genome sequence of <i>C. minuta</i> DSM 22607. Examination and analysis of the annotation revealed an unusually high number of genes predicted to be involved in carbohydrate metabolism, many of which were multiple homologs of RbsA, RbsB and RbsC, which together make up the Ribose ABC Transport System. These genes may be also involved in quorum sensing which could potentially relate to the importance of <i>C. minuta</i> in the gut microbiome.</p>","PeriodicalId":15834,"journal":{"name":"Journal of Genomics","volume":"8 ","pages":"25-29"},"PeriodicalIF":0.0000,"publicationDate":"2020-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.7150/jgen.43162","citationCount":"4","resultStr":"{\"title\":\"Draft Genome Analysis of <i>Christensenella minuta</i> DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function.\",\"authors\":\"David A Coil, Guillaume Jospin, Jonathan A Eisen\",\"doi\":\"10.7150/jgen.43162\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Christensenella minuta</i> was first formally described in 2012 as a member of a novel species, genus, and proposed family of Christensenellaceae. <i>C. minuta</i> was later shown in one study to be part of the most heritable taxonomic group in the human gut microbiome and to be enriched in people with low body mass index (BMI). Mouse work demonstrated that injection of cultured <i>C. minuta</i> into germ-free mice prevented the onset of obesity after a fecal transplant to the mice from high BMI individuals. Here we describe the genome sequence of <i>C. minuta</i> DSM 22607. Examination and analysis of the annotation revealed an unusually high number of genes predicted to be involved in carbohydrate metabolism, many of which were multiple homologs of RbsA, RbsB and RbsC, which together make up the Ribose ABC Transport System. These genes may be also involved in quorum sensing which could potentially relate to the importance of <i>C. minuta</i> in the gut microbiome.</p>\",\"PeriodicalId\":15834,\"journal\":{\"name\":\"Journal of Genomics\",\"volume\":\"8 \",\"pages\":\"25-29\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-02-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.7150/jgen.43162\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Genomics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.7150/jgen.43162\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2020/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Genomics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.7150/jgen.43162","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2020/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 4
摘要
Christensenella minuta于2012年首次被正式描述为Christensenellaceae的一个新种,属和拟议科的成员。后来的一项研究表明,C. minuta是人类肠道微生物组中最具遗传性的分类组的一部分,并且在低体重指数(BMI)的人群中富集。小鼠实验表明,将培养的C. minuta注射到无菌小鼠体内,可以防止高BMI个体的粪便移植到小鼠体内后发生肥胖。这里我们描述了C. minuta DSM 22607的基因组序列。对注释的检查和分析显示,异常多的基因被预测参与碳水化合物代谢,其中许多是RbsA, RbsB和RbsC的多个同源物,它们共同构成核糖ABC运输系统。这些基因也可能参与群体感应,这可能与C. minuta在肠道微生物组中的重要性有关。
Draft Genome Analysis of Christensenella minuta DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function.
Christensenella minuta was first formally described in 2012 as a member of a novel species, genus, and proposed family of Christensenellaceae. C. minuta was later shown in one study to be part of the most heritable taxonomic group in the human gut microbiome and to be enriched in people with low body mass index (BMI). Mouse work demonstrated that injection of cultured C. minuta into germ-free mice prevented the onset of obesity after a fecal transplant to the mice from high BMI individuals. Here we describe the genome sequence of C. minuta DSM 22607. Examination and analysis of the annotation revealed an unusually high number of genes predicted to be involved in carbohydrate metabolism, many of which were multiple homologs of RbsA, RbsB and RbsC, which together make up the Ribose ABC Transport System. These genes may be also involved in quorum sensing which could potentially relate to the importance of C. minuta in the gut microbiome.
期刊介绍:
Journal of Genomics publishes papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Articles published by the journal are rigorously peer-reviewed. Types of articles include: Research paper, Short research communication, Review or mini-reviews, Commentary, Database, Software.