Ben Sidders, Pei Zhang, Kelly Goodwin, Greg O'Connor, Deanna L Russell, Alexandra Borodovsky, Joshua Armenia, Robert McEwen, Bolan Linghu, Johanna C Bendell, Todd M Bauer, Manish R Patel, Gerald S Falchook, Melinda Merchant, Gayle Pouliot, J Carl Barrett, Jonathan R Dry, Rich Woessner, Kris Sachsenmeier
{"title":"腺苷信号是癌症预后和免疫治疗反应的预测工具。","authors":"Ben Sidders, Pei Zhang, Kelly Goodwin, Greg O'Connor, Deanna L Russell, Alexandra Borodovsky, Joshua Armenia, Robert McEwen, Bolan Linghu, Johanna C Bendell, Todd M Bauer, Manish R Patel, Gerald S Falchook, Melinda Merchant, Gayle Pouliot, J Carl Barrett, Jonathan R Dry, Rich Woessner, Kris Sachsenmeier","doi":"10.1158/1078-0432.CCR-19-2183","DOIUrl":null,"url":null,"abstract":"<p><strong>Purpose: </strong>There are several agents in early clinical trials targeting components of the adenosine pathway including A2AR and CD73. The identification of cancers with a significant adenosine drive is critical to understand the potential for these molecules. However, it is challenging to measure tumor adenosine levels at scale, thus novel, clinically tractable biomarkers are needed.</p><p><strong>Experimental design: </strong>We generated a gene expression signature for the adenosine signaling using regulatory networks derived from the literature and validated this in patients. We applied the signature to large cohorts of disease from The Cancer Genome Atlas (TCGA) and cohorts of immune checkpoint inhibitor-treated patients.</p><p><strong>Results: </strong>The signature captures baseline adenosine levels <i>in vivo</i> (<i>r</i> <sup>2</sup> = 0.92, <i>P</i> = 0.018), is reduced after small-molecule inhibition of A2AR in mice (<i>r</i> <sup>2</sup> = -0.62, <i>P</i> = 0.001) and humans (reduction in 5 of 7 patients, 70%), and is abrogated after A2AR knockout. Analysis of TCGA confirms a negative association between adenosine and overall survival (OS, HR = 0.6, <i>P</i> < 2.2e<sup>-16</sup>) as well as progression-free survival (PFS, HR = 0.77, <i>P</i> = 0.0000006). Further, adenosine signaling is associated with reduced OS (HR = 0.47, <i>P</i> < 2.2e<sup>-16</sup>) and PFS (HR = 0.65, <i>P</i> = 0.0000002) in CD8<sup>+</sup> T-cell-infiltrated tumors. Mutation of TGFβ superfamily members is associated with enhanced adenosine signaling and worse OS (HR = 0.43, <i>P</i> < 2.2e<sup>-16</sup>). Finally, adenosine signaling is associated with reduced efficacy of anti-PD1 therapy in published cohorts (HR = 0.29, <i>P</i> = 0.00012).</p><p><strong>Conclusions: </strong>These data support the adenosine pathway as a mediator of a successful antitumor immune response, demonstrate the prognostic potential of the signature for immunotherapy, and inform patient selection strategies for adenosine pathway modulators currently in development.</p>","PeriodicalId":10279,"journal":{"name":"Clinical Cancer Research","volume":" ","pages":"2176-2187"},"PeriodicalIF":10.0000,"publicationDate":"2020-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1158/1078-0432.CCR-19-2183","citationCount":"46","resultStr":"{\"title\":\"Adenosine Signaling Is Prognostic for Cancer Outcome and Has Predictive Utility for Immunotherapeutic Response.\",\"authors\":\"Ben Sidders, Pei Zhang, Kelly Goodwin, Greg O'Connor, Deanna L Russell, Alexandra Borodovsky, Joshua Armenia, Robert McEwen, Bolan Linghu, Johanna C Bendell, Todd M Bauer, Manish R Patel, Gerald S Falchook, Melinda Merchant, Gayle Pouliot, J Carl Barrett, Jonathan R Dry, Rich Woessner, Kris Sachsenmeier\",\"doi\":\"10.1158/1078-0432.CCR-19-2183\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Purpose: </strong>There are several agents in early clinical trials targeting components of the adenosine pathway including A2AR and CD73. The identification of cancers with a significant adenosine drive is critical to understand the potential for these molecules. However, it is challenging to measure tumor adenosine levels at scale, thus novel, clinically tractable biomarkers are needed.</p><p><strong>Experimental design: </strong>We generated a gene expression signature for the adenosine signaling using regulatory networks derived from the literature and validated this in patients. We applied the signature to large cohorts of disease from The Cancer Genome Atlas (TCGA) and cohorts of immune checkpoint inhibitor-treated patients.</p><p><strong>Results: </strong>The signature captures baseline adenosine levels <i>in vivo</i> (<i>r</i> <sup>2</sup> = 0.92, <i>P</i> = 0.018), is reduced after small-molecule inhibition of A2AR in mice (<i>r</i> <sup>2</sup> = -0.62, <i>P</i> = 0.001) and humans (reduction in 5 of 7 patients, 70%), and is abrogated after A2AR knockout. Analysis of TCGA confirms a negative association between adenosine and overall survival (OS, HR = 0.6, <i>P</i> < 2.2e<sup>-16</sup>) as well as progression-free survival (PFS, HR = 0.77, <i>P</i> = 0.0000006). Further, adenosine signaling is associated with reduced OS (HR = 0.47, <i>P</i> < 2.2e<sup>-16</sup>) and PFS (HR = 0.65, <i>P</i> = 0.0000002) in CD8<sup>+</sup> T-cell-infiltrated tumors. Mutation of TGFβ superfamily members is associated with enhanced adenosine signaling and worse OS (HR = 0.43, <i>P</i> < 2.2e<sup>-16</sup>). Finally, adenosine signaling is associated with reduced efficacy of anti-PD1 therapy in published cohorts (HR = 0.29, <i>P</i> = 0.00012).</p><p><strong>Conclusions: </strong>These data support the adenosine pathway as a mediator of a successful antitumor immune response, demonstrate the prognostic potential of the signature for immunotherapy, and inform patient selection strategies for adenosine pathway modulators currently in development.</p>\",\"PeriodicalId\":10279,\"journal\":{\"name\":\"Clinical Cancer Research\",\"volume\":\" \",\"pages\":\"2176-2187\"},\"PeriodicalIF\":10.0000,\"publicationDate\":\"2020-05-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1158/1078-0432.CCR-19-2183\",\"citationCount\":\"46\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Clinical Cancer Research\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1158/1078-0432.CCR-19-2183\",\"RegionNum\":1,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2020/1/17 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"ONCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Clinical Cancer Research","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1158/1078-0432.CCR-19-2183","RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2020/1/17 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"ONCOLOGY","Score":null,"Total":0}
引用次数: 46
摘要
目的:有几种药物在早期临床试验中靶向腺苷途径的成分,包括A2AR和CD73。识别具有显著腺苷驱动的癌症对于了解这些分子的潜力至关重要。然而,大规模测量肿瘤腺苷水平是具有挑战性的,因此需要新的、临床可处理的生物标志物。实验设计:我们利用文献中导出的调控网络生成了腺苷信号的基因表达特征,并在患者中进行了验证。我们将该特征应用于来自癌症基因组图谱(TCGA)的大型疾病队列和免疫检查点抑制剂治疗的患者队列。结果:该特征捕获了体内基线腺苷水平(r2 = 0.92, P = 0.018),在小鼠(r2 = -0.62, P = 0.001)和人类(7例患者中有5例降低,70%)小分子抑制A2AR后降低,在A2AR敲除后消失。TCGA分析证实腺苷与总生存期(OS, HR = 0.6, P < 2.2e-16)和无进展生存期(PFS, HR = 0.77, P = 0.0000006)呈负相关。此外,腺苷信号传导与CD8+ t细胞浸润性肿瘤的OS (HR = 0.47, P < 2.2e-16)和PFS (HR = 0.65, P = 0.0000002)降低相关。TGFβ超家族成员突变与腺苷信号增强和OS恶化相关(HR = 0.43, P < 2.2e-16)。最后,在已发表的队列研究中,腺苷信号与抗pd1治疗的疗效降低有关(HR = 0.29, P = 0.00012)。结论:这些数据支持腺苷途径作为成功的抗肿瘤免疫反应的中介,证明了免疫治疗标记的预后潜力,并为目前正在开发的腺苷途径调节剂的患者选择策略提供了信息。
Adenosine Signaling Is Prognostic for Cancer Outcome and Has Predictive Utility for Immunotherapeutic Response.
Purpose: There are several agents in early clinical trials targeting components of the adenosine pathway including A2AR and CD73. The identification of cancers with a significant adenosine drive is critical to understand the potential for these molecules. However, it is challenging to measure tumor adenosine levels at scale, thus novel, clinically tractable biomarkers are needed.
Experimental design: We generated a gene expression signature for the adenosine signaling using regulatory networks derived from the literature and validated this in patients. We applied the signature to large cohorts of disease from The Cancer Genome Atlas (TCGA) and cohorts of immune checkpoint inhibitor-treated patients.
Results: The signature captures baseline adenosine levels in vivo (r2 = 0.92, P = 0.018), is reduced after small-molecule inhibition of A2AR in mice (r2 = -0.62, P = 0.001) and humans (reduction in 5 of 7 patients, 70%), and is abrogated after A2AR knockout. Analysis of TCGA confirms a negative association between adenosine and overall survival (OS, HR = 0.6, P < 2.2e-16) as well as progression-free survival (PFS, HR = 0.77, P = 0.0000006). Further, adenosine signaling is associated with reduced OS (HR = 0.47, P < 2.2e-16) and PFS (HR = 0.65, P = 0.0000002) in CD8+ T-cell-infiltrated tumors. Mutation of TGFβ superfamily members is associated with enhanced adenosine signaling and worse OS (HR = 0.43, P < 2.2e-16). Finally, adenosine signaling is associated with reduced efficacy of anti-PD1 therapy in published cohorts (HR = 0.29, P = 0.00012).
Conclusions: These data support the adenosine pathway as a mediator of a successful antitumor immune response, demonstrate the prognostic potential of the signature for immunotherapy, and inform patient selection strategies for adenosine pathway modulators currently in development.
期刊介绍:
Clinical Cancer Research is a journal focusing on groundbreaking research in cancer, specifically in the areas where the laboratory and the clinic intersect. Our primary interest lies in clinical trials that investigate novel treatments, accompanied by research on pharmacology, molecular alterations, and biomarkers that can predict response or resistance to these treatments. Furthermore, we prioritize laboratory and animal studies that explore new drugs and targeted agents with the potential to advance to clinical trials. We also encourage research on targetable mechanisms of cancer development, progression, and metastasis.