基于质谱的DNA内合组学的新兴技术。

Q2 Biochemistry, Genetics and Molecular Biology
High-Throughput Pub Date : 2019-05-14 DOI:10.3390/ht8020013
Jingshu Guo, Robert J Turesky
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引用次数: 25

摘要

DNA加合物,即暴露于环境和膳食基因毒物以及内源产生的亲电试剂时DNA的共价修饰,其测量为DNA损伤提供了分子证据。随着质谱(MS)仪器的灵敏度和扫描速度的提高,特别是高分辨率的质谱,现在可以通过DNA内收组学方法筛选人类基因组中DNA损伤的总体。在DNA内收组分析中已经使用了几种质谱平台,每种平台都有其优点和局限性。2'-脱氧核糖在碰撞诱导解离时从修饰的核苷中丢失是筛选DNA加合物时使用的主要过渡特征。源自蛋白质组学和代谢组学的一些先进的数据依赖和数据独立扫描技术已经为DNA内收组学量身定制。DNA内收组学是人体暴露评估中的一项新兴技术。随着分析技术的成熟和生物信息学工具可用于分析质谱数据,DNA内收组学可以促进我们对化学暴露在DNA损伤和疾病风险中的作用的理解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Emerging Technologies in Mass Spectrometry-Based DNA Adductomics.

Emerging Technologies in Mass Spectrometry-Based DNA Adductomics.

Emerging Technologies in Mass Spectrometry-Based DNA Adductomics.

Emerging Technologies in Mass Spectrometry-Based DNA Adductomics.

The measurement of DNA adducts, the covalent modifications of DNA upon the exposure to the environmental and dietary genotoxicants and endogenously produced electrophiles, provides molecular evidence for DNA damage. With the recent improvements in the sensitivity and scanning speed of mass spectrometry (MS) instrumentation, particularly high-resolution MS, it is now feasible to screen for the totality of DNA damage in the human genome through DNA adductomics approaches. Several MS platforms have been used in DNA adductomic analysis, each of which has its strengths and limitations. The loss of 2'-deoxyribose from the modified nucleoside upon collision-induced dissociation is the main transition feature utilized in the screening of DNA adducts. Several advanced data-dependent and data-independent scanning techniques originated from proteomics and metabolomics have been tailored for DNA adductomics. The field of DNA adductomics is an emerging technology in human exposure assessment. As the analytical technology matures and bioinformatics tools become available for analysis of the MS data, DNA adductomics can advance our understanding about the role of chemical exposures in DNA damage and disease risk.

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来源期刊
High-Throughput
High-Throughput Biochemistry, Genetics and Molecular Biology-Biotechnology
CiteScore
3.60
自引率
0.00%
发文量
0
审稿时长
9 weeks
期刊介绍: High-Throughput (formerly Microarrays, ISSN 2076-3905) is a multidisciplinary peer-reviewed scientific journal that provides an advanced forum for the publication of studies reporting high-dimensional approaches and developments in Life Sciences, Chemistry and related fields. Our aim is to encourage scientists to publish their experimental and theoretical results based on high-throughput techniques as well as computational and statistical tools for data analysis and interpretation. The full experimental or methodological details must be provided so that the results can be reproduced. There is no restriction on the length of the papers. High-Throughput invites submissions covering several topics, including, but not limited to: -Microarrays -DNA Sequencing -RNA Sequencing -Protein Identification and Quantification -Cell-based Approaches -Omics Technologies -Imaging -Bioinformatics -Computational Biology/Chemistry -Statistics -Integrative Omics -Drug Discovery and Development -Microfluidics -Lab-on-a-chip -Data Mining -Databases -Multiplex Assays
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