从北极表层海水中分离的噬细胞科Arcticibacterium luteifluviistatis SM1504T的全基因组序列。

Q3 Biochemistry, Genetics and Molecular Biology
Standards in Genomic Sciences Pub Date : 2018-11-26 eCollection Date: 2018-01-01 DOI:10.1186/s40793-018-0335-x
Yi Li, Xiao-Han Guo, Yan-Ru Dang, Lin-Lin Sun, Xi-Ying Zhang, Xiu-Lan Chen, Qi-Long Qin, Peng Wang
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引用次数: 0

摘要

黄曲霉SM1504T是从北极表层海水中分离得到的一个新属。到目前为止,还没有Arcticibacterium基因组的报道,它们的基因组组成和代谢特征仍然未知。在此,我们报道了黄曲霉SM1504T的完整基因组序列,包括5379839 平均GC含量为37.20%。在基因组中检测到与各种胁迫(如辐射、渗透和抗生素)抗性相关的基因以及编码类胡萝卜素和柔红霉素生物合成的基因簇。此外,该基因组包含245kb的基因组岛和15kb的不完全原噬菌体区域。发现大量蛋白质属于碳水化合物代谢,特别是在多糖利用方面。这些相关基因和代谢特征揭示了适应不同极端北极环境的遗传基础。黄曲霉SM1504T的基因组序列也表明,Arcticibacterium属可能是北极海水生态系统中重要的有机碳分解者。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Complete genome sequence of <i>Arcticibacterium luteifluviistationis</i> SM1504<sup>T</sup>, a cytophagaceae bacterium isolated from Arctic surface seawater.

Complete genome sequence of <i>Arcticibacterium luteifluviistationis</i> SM1504<sup>T</sup>, a cytophagaceae bacterium isolated from Arctic surface seawater.

Complete genome sequence of <i>Arcticibacterium luteifluviistationis</i> SM1504<sup>T</sup>, a cytophagaceae bacterium isolated from Arctic surface seawater.

Complete genome sequence of Arcticibacterium luteifluviistationis SM1504T, a cytophagaceae bacterium isolated from Arctic surface seawater.

Arcticibacterium luteifluviistationis SM1504T was isolated from Arctic surface seawater and classified as a novel genus of the phylum Bacteroides. To date, no Arcticibacterium genomes have been reported, their genomic compositions and metabolic features are still unknown. Here, we reported the complete genome sequence of A. luteifluviistationis SM1504T, which comprises 5,379,839 bp with an average GC content of 37.20%. Genes related to various stress (such as radiation, osmosis and antibiotics) resistance and gene clusters coding for carotenoid and flexirubin biosynthesis were detected in the genome. Moreover, the genome contained a 245-kb genomic island and a 15-kb incomplete prophage region. A great percentage of proteins belonging to carbohydrate metabolism especially in regard to polysaccharides utilization were found. These related genes and metabolic characteristics revealed genetic basis for adapting to the diverse extreme Arctic environments. The genome sequence of A. luteifluviistationis SM1504T also implied that the genus Arcticibacterium may act as a vital organic carbon matter decomposer in the Arctic seawater ecosystem.

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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
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审稿时长
6-12 weeks
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