从原油污染土壤中分离出的新型耐寒细菌 Planococcus maritimus Y42 的完整基因组序列。

Q3 Biochemistry, Genetics and Molecular Biology
Standards in Genomic Sciences Pub Date : 2018-10-10 eCollection Date: 2018-01-01 DOI:10.1186/s40793-018-0328-9
Ruiqi Yang, Guangxiu Liu, Tuo Chen, Wei Zhang, Gaosen Zhang, Sijing Chang
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引用次数: 0

摘要

从盖达姆盆地受石油污染的土壤中分离出的海洋 Planococcus 菌株 Y42 能在 20 °C 的温度下利用原油作为其唯一的碳和能量来源。对海洋褐藻菌株 Y42 的基因组进行了测序,以提供有关其特性的信息。基因组分析表明,菌株 Y42 的基因组包含一个环状 DNA 染色体(大小为 3,718,896 bp,GC 含量为 48.8%)和三个质粒(329,482、89,073 和 12,282 bp)。虽然 Y42 菌株降解原油的能力并没有明显高于其他石油降解菌,但作为本土石油降解菌,Y42 菌株的存在对减少整体环境影响起到了重要作用。此外,基因组注释显示,菌株 Y42 有许多负责降解碳氢化合物的基因。基因组的结构特征可能为 P. maritimus 菌株 Y42 在石油污染环境中生存提供了竞争优势,值得进一步研究其在石油降解方面的作用,以恢复原油污染环境。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

The complete genomic sequence of a novel cold-adapted bacterium, <i>Planococcus maritimus</i> Y42, isolated from crude oil-contaminated soil.

The complete genomic sequence of a novel cold-adapted bacterium, <i>Planococcus maritimus</i> Y42, isolated from crude oil-contaminated soil.

The complete genomic sequence of a novel cold-adapted bacterium, <i>Planococcus maritimus</i> Y42, isolated from crude oil-contaminated soil.

The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil.

Planococcus maritimus Y42, isolated from the petroleum-contaminated soil of the Qaidam Basin, can use crude oil as its sole source of carbon and energy at 20 °C. The genome of P. maritimus strain Y42 has been sequenced to provide information on its properties. Genomic analysis shows that the genome of strain Y42 contains one circular DNA chromosome with a size of 3,718,896 bp and a GC content of 48.8%, and three plasmids (329,482; 89,073; and 12,282 bp). Although the strain Y42 did not show a remarkably higher ability in degrading crude oil than other oil-degrading bacteria, the existence of strain Y42 played a significant role to reducing the overall environmental impact as an indigenous oil-degrading bacterium. In addition, genome annotation revealed that strain Y42 has many genes responsible for hydrocarbon degradation. Structural features of the genomes might provide a competitive edge for P. maritimus strain Y42 to survive in oil-polluted environments and be worthy of further study in oil degradation for the recovery of crude oil-polluted environments.

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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
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0.00%
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审稿时长
6-12 weeks
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