新菌株 Cad16T 的完整基因组序列,该菌株是从高山兼性湖 Cadagno 分离出来的一种光解自养型紫硫细菌。

Q3 Biochemistry, Genetics and Molecular Biology
Standards in Genomic Sciences Pub Date : 2018-05-09 eCollection Date: 2018-01-01 DOI:10.1186/s40793-018-0317-z
Samuel M Luedin, Joël F Pothier, Francesco Danza, Nicola Storelli, Niels-Ulrik Frigaard, Matthias Wittwer, Mauro Tonolla
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引用次数: 0

摘要

"新菌株 Cad16T 是一种光能自养的紫色硫细菌,属于 Gammaproteobacteria 门 Chromatiaceae 科。模式菌株 Cad16T 分离自瑞士高山兼性湖泊 Cadagno 的化学跃层。菌株 Cad16T 代表了硫驱动细菌生态系统中碳固定方面的一个关键物种。目前已对菌株 Cad16T 的 7.74-Mbp 基因组进行了测序和注释。它编码了 6237 个预测的蛋白质序列和 59 个 RNA 序列。基于 16S rRNA 的系统进化比较显示,Thiodictyon elegans 菌株 DSM 232T 是关系最密切的物种。发现的基因涉及硫氧化、中心碳代谢和跨膜运输。值得注意的是,在 0.48 Mb 的质粒 pTs485 上发现了编码光合作用机制和色素生物合成的基因簇。我们对 Cad16T 基因组进行了详细了解,并结合卡达尼奥湖的微生物生态系统对其进行了分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Complete genome sequence of "<i>Thiodictyon syntrophicum</i>" sp. nov. strain Cad16<sup>T</sup>, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.

Complete genome sequence of "<i>Thiodictyon syntrophicum</i>" sp. nov. strain Cad16<sup>T</sup>, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.

Complete genome sequence of "<i>Thiodictyon syntrophicum</i>" sp. nov. strain Cad16<sup>T</sup>, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.

Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.

"Thiodictyon syntrophicum" sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.

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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
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0
审稿时长
6-12 weeks
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