埋甲虫(鞘翅目:Silphidae)发育阶段转录组的重新组装和关键免疫转录物的鉴定。

Journal of Genomics Pub Date : 2018-04-10 eCollection Date: 2018-01-01 DOI:10.7150/jgen.24228
Harim I Won, Thomas T Schulze, Emalie J Clement, Gabrielle F Watson, Sean M Watson, Rosalie C Warner, Elizabeth A M Ramler, Elias J Witte, Mark A Schoenbeck, Claudia M Rauter, Paul H Davis
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引用次数: 12

摘要

埋甲虫(Nicrophorus spp.)是为数不多的提供亲代照顾的昆虫之一,而不属于像蚂蚁或蜜蜂这样的真社会昆虫。这种行为会产生能量消耗,这可以从免疫缺陷和繁殖甲虫的较短寿命中得到证明。由于缺乏组装转录组,对这些甲虫的分子生物学知之甚少。本工作详细介绍了圆颈微栉虫在多个发育阶段转录组的组装和分析。RNA-Seq reads通过下一代测序获得,转录组使用Trinity组装器组装。通过基因本体(GO)、真核同源群(KOG)和京都基因与基因组百科全书(KEGG)分析进行功能表征,验证了该组装。差异表达分析强调了发育阶段特异性表达模式,并讨论了免疫相关转录本。所提供的数据提供了一个有价值的分子资源,以帮助进一步研究整个生物体性发育的免疫能力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

<i>De novo</i> Assembly of the Burying Beetle <i>Nicrophorus orbicollis</i> (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts.

<i>De novo</i> Assembly of the Burying Beetle <i>Nicrophorus orbicollis</i> (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts.

<i>De novo</i> Assembly of the Burying Beetle <i>Nicrophorus orbicollis</i> (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts.

De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts.

Burying beetles (Nicrophorus spp.) are among the relatively few insects that provide parental care while not belonging to the eusocial insects such as ants or bees. This behavior incurs energy costs as evidenced by immune deficits and shorter life-spans in reproducing beetles. In the absence of an assembled transcriptome, relatively little is known concerning the molecular biology of these beetles. This work details the assembly and analysis of the Nicrophorus orbicollis transcriptome at multiple developmental stages. RNA-Seq reads were obtained by next-generation sequencing and the transcriptome was assembled using the Trinity assembler. Validation of the assembly was performed by functional characterization using Gene Ontology (GO), Eukaryotic Orthologous Groups (KOG), and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. Differential expression analysis highlights developmental stage-specific expression patterns, and immunity-related transcripts are discussed. The data presented provides a valuable molecular resource to aid further investigation into immunocompetence throughout this organism's sexual development.

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来源期刊
自引率
0.00%
发文量
11
审稿时长
12 weeks
期刊介绍: Journal of Genomics publishes papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Articles published by the journal are rigorously peer-reviewed. Types of articles include: Research paper, Short research communication, Review or mini-reviews, Commentary, Database, Software.
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