{"title":"在北海浮游植物繁殖期间分离到的玫瑰杆菌群的代表——弗里西亚浮游菌型菌株(SH6-1T)的基因组序列。","authors":"Insa Bakenhus, Sonja Voget, Anja Poehlein, Thorsten Brinkhoff, Rolf Daniel, Meinhard Simon","doi":"10.1186/s40793-018-0311-5","DOIUrl":null,"url":null,"abstract":"<p><p><i>Planktotalea frisia</i> SH6-1<sup>T</sup> Hahnke et al. (Int J Syst Evol Microbiol 62:1619-24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the <i>Roseobacter</i> group within the alphaproteobacterial family <i>Rhodobacteraceae</i>. Here we describe the draft genome sequence and annotation of the type strain SH6-1<sup>T</sup>. The genome comprises 4,106,736 bp and contains 4128 protein-coding and 38 RNA genes. The draft genome sequence provides evidence for at least three extrachromosomal elements, encodes genes for DMSP utilization, quorum sensing, photoheterotrophy and a type IV secretion system. This indicates not only adaptation to a free-living lifestyle of <i>P. frisia</i> but points also to interactions with prokaryotic or eukaryotic organisms.</p>","PeriodicalId":21965,"journal":{"name":"Standards in Genomic Sciences","volume":"13 ","pages":"7"},"PeriodicalIF":0.0000,"publicationDate":"2018-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40793-018-0311-5","citationCount":"5","resultStr":"{\"title\":\"Genome sequence of <i>Planktotalea frisia</i> type strain (SH6-1<sup>T</sup>), a representative of the <i>Roseobacter</i> group isolated from the North Sea during a phytoplankton bloom.\",\"authors\":\"Insa Bakenhus, Sonja Voget, Anja Poehlein, Thorsten Brinkhoff, Rolf Daniel, Meinhard Simon\",\"doi\":\"10.1186/s40793-018-0311-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Planktotalea frisia</i> SH6-1<sup>T</sup> Hahnke et al. (Int J Syst Evol Microbiol 62:1619-24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the <i>Roseobacter</i> group within the alphaproteobacterial family <i>Rhodobacteraceae</i>. Here we describe the draft genome sequence and annotation of the type strain SH6-1<sup>T</sup>. The genome comprises 4,106,736 bp and contains 4128 protein-coding and 38 RNA genes. The draft genome sequence provides evidence for at least three extrachromosomal elements, encodes genes for DMSP utilization, quorum sensing, photoheterotrophy and a type IV secretion system. This indicates not only adaptation to a free-living lifestyle of <i>P. frisia</i> but points also to interactions with prokaryotic or eukaryotic organisms.</p>\",\"PeriodicalId\":21965,\"journal\":{\"name\":\"Standards in Genomic Sciences\",\"volume\":\"13 \",\"pages\":\"7\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2018-04-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1186/s40793-018-0311-5\",\"citationCount\":\"5\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Standards in Genomic Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/s40793-018-0311-5\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2018/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Standards in Genomic Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40793-018-0311-5","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2018/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 5
摘要
浮游菌(plankton - ea frisia SH6-1T Hahnke et al.)是一种在北海南部浮游植物繁殖过程中分离出来的浮游海洋细菌。它属于红杆菌科的红杆菌群。本文描述了型菌株SH6-1T的基因组序列草图和注释。基因组全长4,106,736 bp，包含4128个蛋白质编码基因和38个RNA基因。基因组序列草图提供了至少三个染色体外元件的证据，编码DMSP利用、群体感应、光异养和IV型分泌系统的基因。这不仅表明弗里斯假单胞菌适应了自由生活的生活方式，而且还指出了与原核生物或真核生物的相互作用。
Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom.
Planktotalea frisia SH6-1T Hahnke et al. (Int J Syst Evol Microbiol 62:1619-24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae. Here we describe the draft genome sequence and annotation of the type strain SH6-1T. The genome comprises 4,106,736 bp and contains 4128 protein-coding and 38 RNA genes. The draft genome sequence provides evidence for at least three extrachromosomal elements, encodes genes for DMSP utilization, quorum sensing, photoheterotrophy and a type IV secretion system. This indicates not only adaptation to a free-living lifestyle of P. frisia but points also to interactions with prokaryotic or eukaryotic organisms.
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