[几个基因联合作用的遗传风险评估:关键评估]。

Genetika Pub Date : 2016-07-01
A V Rubanovich, N N Khromov-Borisov
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引用次数: 0

摘要

在评估基因对定量或定性表型的联合作用时,我们遇到了一种可以被命名为“风险评分总和悖论”的现象。当对风险等位基因的搜索和对其联合作用的评估使用相同的单个数据集时,就会出现这种情况。在计算所谓的遗传风险评分(GRS)时,通常会出现这种方法上的错误,GRS指的是与疾病相关的等位基因总数。从许多已发表的遗传关联研究中,我们考虑了一些例子,其中声称的统计上显著的影响可以归因于“风险评分求和悖论”。在综述的第二部分,我们讨论了针对所谓的“n≪p问题”(点的数量远远小于可能的预测因子的数量)的多元回归分析的当前修改。考虑了模型选择的各种算法(搜索重要的预测器组合),从常见的“顶级”预测器的边缘筛选到LASSO和其他现代压缩感知算法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
[Genetic risk assessment of the joint effect of several genes: Critical appraisal].

When assessing the combined action of genes on the quantitative or qualitative phenotype we encounter a phenomenon that could be named the “paradox of the risk score summation.” It arises when the search of risk allele and assessment of their combined action are performed with the same single dataset. Too often such methodological error occurs when calculating the so called genetic risk score (GRS), which refers to the total number of alleles associated with the disease. Examples from numerous published genetic association studies are considered in which the claimed statistically significant effects can be attributed to the “risk score summation paradox.” In the second section of the review we discuss the current modifications of multiple regression analysis addressed to the so called “n ≪ p problem” (the number of points is much smaller than the number of possible predictors). Various algorithms for the model selection (searching the significant predictor combinations) are considered, beginning from the common marginal screening of the “top” predictors to LASSO and other modern algorithms of compressed sensing.

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