Lei Hou, Jia Sun, Xiabing Xie, Nianzhi Jiao, Yao Zhang
{"title":"长江口扬子急性球菌JL1095T (DSM 28604T)基因组序列分析","authors":"Lei Hou, Jia Sun, Xiabing Xie, Nianzhi Jiao, Yao Zhang","doi":"10.1186/s40793-017-0295-6","DOIUrl":null,"url":null,"abstract":"<p><p><i>Acuticoccus yangtzensis</i> JL1095<sup>T</sup> is a proteobacterium from a genus belonging to the family <i>Rhodobacteraceae</i>; it was isolated from surface waters of the Yangtze Estuary, China. This strain displays the capability to utilize aromatic and simple carbon compounds. Here, we present the genome sequence, annotations, and features of <i>A. yangtzensis</i> JL1095<sup>T</sup>. This strain has a genome size of 5,043,263 bp with a G + C content of 68.63%. The genome contains 4286 protein-coding genes, 56 RNA genes, and 83 pseudo genes. Many of the protein-coding genes were predicted to encode proteins involved in carbon metabolism pathways, such as aromatic degradation and methane metabolism. Notably, a total of 31 genes were predicted to encode form II carbon monoxide dehydrogenases, suggesting potential for carbon monoxide oxidation. The genome analysis helps better understand the major carbon metabolic pathways of this strain and its role in carbon cycling in coastal marine ecosystems.</p>","PeriodicalId":21965,"journal":{"name":"Standards in Genomic Sciences","volume":"12 ","pages":"91"},"PeriodicalIF":0.0000,"publicationDate":"2017-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40793-017-0295-6","citationCount":"4","resultStr":"{\"title\":\"Genome sequence of <i>Acuticoccus yangtzensis</i> JL1095T (DSM 28604T) isolated from the Yangtze Estuary.\",\"authors\":\"Lei Hou, Jia Sun, Xiabing Xie, Nianzhi Jiao, Yao Zhang\",\"doi\":\"10.1186/s40793-017-0295-6\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Acuticoccus yangtzensis</i> JL1095<sup>T</sup> is a proteobacterium from a genus belonging to the family <i>Rhodobacteraceae</i>; it was isolated from surface waters of the Yangtze Estuary, China. This strain displays the capability to utilize aromatic and simple carbon compounds. Here, we present the genome sequence, annotations, and features of <i>A. yangtzensis</i> JL1095<sup>T</sup>. This strain has a genome size of 5,043,263 bp with a G + C content of 68.63%. The genome contains 4286 protein-coding genes, 56 RNA genes, and 83 pseudo genes. Many of the protein-coding genes were predicted to encode proteins involved in carbon metabolism pathways, such as aromatic degradation and methane metabolism. Notably, a total of 31 genes were predicted to encode form II carbon monoxide dehydrogenases, suggesting potential for carbon monoxide oxidation. The genome analysis helps better understand the major carbon metabolic pathways of this strain and its role in carbon cycling in coastal marine ecosystems.</p>\",\"PeriodicalId\":21965,\"journal\":{\"name\":\"Standards in Genomic Sciences\",\"volume\":\"12 \",\"pages\":\"91\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-12-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1186/s40793-017-0295-6\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Standards in Genomic Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/s40793-017-0295-6\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2017/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Standards in Genomic Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40793-017-0295-6","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2017/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 4
摘要
杨氏急性球菌JL1095T是红杆菌科一属的变形杆菌;它是从中国长江口的表层水体中分离出来的。该菌株显示出利用芳香和简单碳化合物的能力。本文介绍了扬子a.l angtzensis JL1095T的基因组序列、注释和特征。该菌株基因组大小为5,043,263 bp, G + C含量为68.63%。基因组包含4286个蛋白质编码基因、56个RNA基因和83个伪基因。许多蛋白质编码基因被预测编码参与碳代谢途径的蛋白质,如芳香降解和甲烷代谢。值得注意的是,总共有31个基因被预测编码II型一氧化碳脱氢酶,这表明一氧化碳氧化的潜力。基因组分析有助于更好地了解该菌株的主要碳代谢途径及其在沿海海洋生态系统中碳循环中的作用。
Genome sequence of Acuticoccus yangtzensis JL1095T (DSM 28604T) isolated from the Yangtze Estuary.
Acuticoccus yangtzensis JL1095T is a proteobacterium from a genus belonging to the family Rhodobacteraceae; it was isolated from surface waters of the Yangtze Estuary, China. This strain displays the capability to utilize aromatic and simple carbon compounds. Here, we present the genome sequence, annotations, and features of A. yangtzensis JL1095T. This strain has a genome size of 5,043,263 bp with a G + C content of 68.63%. The genome contains 4286 protein-coding genes, 56 RNA genes, and 83 pseudo genes. Many of the protein-coding genes were predicted to encode proteins involved in carbon metabolism pathways, such as aromatic degradation and methane metabolism. Notably, a total of 31 genes were predicted to encode form II carbon monoxide dehydrogenases, suggesting potential for carbon monoxide oxidation. The genome analysis helps better understand the major carbon metabolic pathways of this strain and its role in carbon cycling in coastal marine ecosystems.