Raquel Quatrini, Lorena V Escudero, Ana Moya-Beltrán, Pedro A Galleguillos, Francisco Issotta, Mauricio Acosta, Juan Pablo Cárdenas, Harold Nuñez, Karina Salinas, David S Holmes, Cecilia Demergasso
{"title":"从智利北部酸性高盐戈尔贝亚盐滩分离出的硫氧酸盐杆菌(Acidithiobacillus thiooxidans CLST)基因组序列草案。","authors":"Raquel Quatrini, Lorena V Escudero, Ana Moya-Beltrán, Pedro A Galleguillos, Francisco Issotta, Mauricio Acosta, Juan Pablo Cárdenas, Harold Nuñez, Karina Salinas, David S Holmes, Cecilia Demergasso","doi":"10.1186/s40793-017-0305-8","DOIUrl":null,"url":null,"abstract":"<p><p>10.1601/nm.2199 CLST is an extremely acidophilic gamma-proteobacteria that was isolated from the Gorbea salt flat, an acidic hypersaline environment in northern Chile. This kind of environment is considered a terrestrial analog of ancient Martian terrains and a source of new material for biotechnological applications. 10.1601/nm.2199 plays a key role in industrial bioleaching; it has the capacity of generating and maintaining acidic conditions by producing sulfuric acid and it can also remove sulfur layers from the surface of minerals, which are detrimental for their dissolution. CLST is a strain of 10.1601/nm.2199 able to tolerate moderate chloride concentrations (up to 15 g L<sup>-1</sup> Cl<sup>-</sup>), a feature that is quite unusual in extreme acidophilic microorganisms. Basic microbiological features and genomic properties of this biotechnologically relevant strain are described in this work. The 3,974,949 bp draft genome is arranged into 40 scaffolds of 389 contigs containing 3866 protein-coding genes and 75 RNAs encoding genes. This is the first draft genome of a halotolerant 10.1601/nm.2199 strain. The release of the genome sequence of this strain improves representation of these extreme acidophilic Gram negative bacteria in public databases and strengthens the framework for further investigation of the physiological diversity and ecological function of 10.1601/nm.2199 populations.</p>","PeriodicalId":21965,"journal":{"name":"Standards in Genomic Sciences","volume":"12 ","pages":"84"},"PeriodicalIF":0.0000,"publicationDate":"2017-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5735861/pdf/","citationCount":"0","resultStr":"{\"title\":\"Draft genome sequence of <i>Acidithiobacillus thiooxidans</i> CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile.\",\"authors\":\"Raquel Quatrini, Lorena V Escudero, Ana Moya-Beltrán, Pedro A Galleguillos, Francisco Issotta, Mauricio Acosta, Juan Pablo Cárdenas, Harold Nuñez, Karina Salinas, David S Holmes, Cecilia Demergasso\",\"doi\":\"10.1186/s40793-017-0305-8\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>10.1601/nm.2199 CLST is an extremely acidophilic gamma-proteobacteria that was isolated from the Gorbea salt flat, an acidic hypersaline environment in northern Chile. 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The release of the genome sequence of this strain improves representation of these extreme acidophilic Gram negative bacteria in public databases and strengthens the framework for further investigation of the physiological diversity and ecological function of 10.1601/nm.2199 populations.</p>\",\"PeriodicalId\":21965,\"journal\":{\"name\":\"Standards in Genomic Sciences\",\"volume\":\"12 \",\"pages\":\"84\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-12-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5735861/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Standards in Genomic Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/s40793-017-0305-8\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2017/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Standards in Genomic Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40793-017-0305-8","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2017/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0
摘要
10.1601/nm.2199 CLST 是一种极其嗜酸的γ-蛋白细菌,它是从智利北部的戈尔贝亚盐滩(Gorbea salt flat)--一种酸性高盐环境--中分离出来的。这种环境被认为是古代火星地形的陆地类似物,也是生物技术应用的新材料来源。10.1601/nm.2199 在工业生物浸出中发挥着关键作用;它能够通过产生硫酸来生成和维持酸性条件,还能去除矿物表面的硫层,因为硫层不利于矿物的溶解。CLST 是 10.1601/nm.2199 菌株,能够耐受中等浓度的氯化物(高达 15 g L-1 Cl-),这在极端嗜酸微生物中并不多见。这项工作描述了这一生物技术相关菌株的基本微生物学特征和基因组特性。3,974,949 bp 的基因组草案被排列成由 389 个等位基因组成的 40 个支架,其中包含 3866 个编码蛋白质的基因和 75 个编码 RNA 的基因。这是第一个耐卤 10.1601/nm.2199 菌株的基因组草案。该菌株基因组序列的发布提高了这些极端嗜酸性革兰氏阴性菌在公共数据库中的代表性,并加强了进一步研究 10.1601/nm.2199 菌群的生理多样性和生态功能的框架。
Draft genome sequence of Acidithiobacillus thiooxidans CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile.
10.1601/nm.2199 CLST is an extremely acidophilic gamma-proteobacteria that was isolated from the Gorbea salt flat, an acidic hypersaline environment in northern Chile. This kind of environment is considered a terrestrial analog of ancient Martian terrains and a source of new material for biotechnological applications. 10.1601/nm.2199 plays a key role in industrial bioleaching; it has the capacity of generating and maintaining acidic conditions by producing sulfuric acid and it can also remove sulfur layers from the surface of minerals, which are detrimental for their dissolution. CLST is a strain of 10.1601/nm.2199 able to tolerate moderate chloride concentrations (up to 15 g L-1 Cl-), a feature that is quite unusual in extreme acidophilic microorganisms. Basic microbiological features and genomic properties of this biotechnologically relevant strain are described in this work. The 3,974,949 bp draft genome is arranged into 40 scaffolds of 389 contigs containing 3866 protein-coding genes and 75 RNAs encoding genes. This is the first draft genome of a halotolerant 10.1601/nm.2199 strain. The release of the genome sequence of this strain improves representation of these extreme acidophilic Gram negative bacteria in public databases and strengthens the framework for further investigation of the physiological diversity and ecological function of 10.1601/nm.2199 populations.