Diogo N Proença, William B Whitman, Nicole Shapiro, Tanja Woyke, Nikos C Kyrpides, Paula V Morais
{"title":"纤维素溶解内生菌 Chitinophaga costaii A37T2T 的基因组序列草案。","authors":"Diogo N Proença, William B Whitman, Nicole Shapiro, Tanja Woyke, Nikos C Kyrpides, Paula V Morais","doi":"10.1186/s40793-017-0262-2","DOIUrl":null,"url":null,"abstract":"<p><p>Here we report the draft genome sequence of <i>Chitinophaga costai</i> A37T2<sup>T</sup> (=CIP 110584<sup>T</sup>, =LMG 27458<sup>T</sup>), which was isolated from the endophytic community of <i>Pinus pinaster</i> tree. The total genome size of <i>C. costaii</i> A37T2<sup>T</sup> is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2<sup>T</sup> encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of <i>C. pinensis</i> DSM 2588<sup>T</sup>. The genomic information suggests the potential of the strain A37T2<sup>T</sup> to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field.</p>","PeriodicalId":21965,"journal":{"name":"Standards in Genomic Sciences","volume":"12 ","pages":"53"},"PeriodicalIF":0.0000,"publicationDate":"2017-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585966/pdf/","citationCount":"0","resultStr":"{\"title\":\"Draft genome sequence of the cellulolytic endophyte <i>Chitinophaga costaii</i> A37T2<sup>T</sup>.\",\"authors\":\"Diogo N Proença, William B Whitman, Nicole Shapiro, Tanja Woyke, Nikos C Kyrpides, Paula V Morais\",\"doi\":\"10.1186/s40793-017-0262-2\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Here we report the draft genome sequence of <i>Chitinophaga costai</i> A37T2<sup>T</sup> (=CIP 110584<sup>T</sup>, =LMG 27458<sup>T</sup>), which was isolated from the endophytic community of <i>Pinus pinaster</i> tree. The total genome size of <i>C. costaii</i> A37T2<sup>T</sup> is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2<sup>T</sup> encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of <i>C. pinensis</i> DSM 2588<sup>T</sup>. The genomic information suggests the potential of the strain A37T2<sup>T</sup> to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field.</p>\",\"PeriodicalId\":21965,\"journal\":{\"name\":\"Standards in Genomic Sciences\",\"volume\":\"12 \",\"pages\":\"53\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-09-06\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585966/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Standards in Genomic Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/s40793-017-0262-2\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2017/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Standards in Genomic Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40793-017-0262-2","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2017/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T.
Here we report the draft genome sequence of Chitinophaga costai A37T2T (=CIP 110584T, =LMG 27458T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37T2T is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2T encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of C. pinensis DSM 2588T. The genomic information suggests the potential of the strain A37T2T to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field.
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