嗜热古菌 Pyrodictium delaneyi 菌株 hulk(一种铁和硝酸盐还原菌)的基因组草案揭示了硫酸盐还原能力。

Q3 Biochemistry, Genetics and Molecular Biology
Standards in Genomic Sciences Pub Date : 2017-08-15 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0260-4
Lucas M Demey, Caitlin R Miller, Michael P Manzella, Rachel R Spurbeck, Sukhinder K Sandhu, Gemma Reguera, Kazem Kashefi
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引用次数: 0

摘要

Pyrodictium delaneyi菌株Hulk是从东北太平洋胡安-德富卡海脊主奋进段(纬度47.9501,经度-129.0970,深度2200米)Hulk硫化物丘采集的烟囱样本中分离出来的新测序菌株。Hulk 菌株的基因组草案与类型菌株 Su06T 的完整基因组相似度为 99.77%,后者与 Hulk 菌株一样具有还原铁和硝酸盐的呼吸能力。对菌株 Hulk 基因组的注释发现了用于还原几种含硫电子受体的基因,而实验证实菌株 Hulk 具有这种未曾想到的呼吸能力。这使得 delaneyi P. 菌株 Hulk 成为第一个通过还原铁、硝酸盐和含硫电子受体获得生长能量的嗜热古生物。在这里,我们介绍了 delaneyi 古菌株 Hulk 基因组最显著的特征,并确定了编码对其在高温下呼吸多功能性至关重要的蛋白质的基因。本文所描述的基因组序列草案包含 9 个等位组、2019 个蛋白编码基因、53 个 RNA 基因和 1365 个假定基因,共 2,042,801 bp。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

The draft genome of the hyperthermophilic archaeon <i>Pyrodictium delaneyi</i> strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction.

The draft genome of the hyperthermophilic archaeon <i>Pyrodictium delaneyi</i> strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction.

The draft genome of the hyperthermophilic archaeon <i>Pyrodictium delaneyi</i> strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction.

The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction.

Pyrodictium delaneyi strain Hulk is a newly sequenced strain isolated from chimney samples collected from the Hulk sulfide mound on the main Endeavour Segment of the Juan de Fuca Ridge (47.9501 latitude, -129.0970 longitude, depth 2200 m) in the Northeast Pacific Ocean. The draft genome of strain Hulk shared 99.77% similarity with the complete genome of the type strain Su06T, which shares with strain Hulk the ability to reduce iron and nitrate for respiration. The annotation of the genome of strain Hulk identified genes for the reduction of several sulfur-containing electron acceptors, an unsuspected respiratory capability in this species that was experimentally confirmed for strain Hulk. This makes P. delaneyi strain Hulk the first hyperthermophilic archaeon known to gain energy for growth by reduction of iron, nitrate, and sulfur-containing electron acceptors. Here we present the most notable features of the genome of P. delaneyi strain Hulk and identify genes encoding proteins critical to its respiratory versatility at high temperatures. The description presented here corresponds to a draft genome sequence containing 2,042,801 bp in 9 contigs, 2019 protein-coding genes, 53 RNA genes, and 1365 hypothetical genes.

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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
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0
审稿时长
6-12 weeks
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