变色龙:多尺度结构生物学模型的动态颜色映射。

Nicholas Waldin, Mathieu Le Muzic, Manuela Waldner, Eduard Gröller, David Goodsell, Autin Ludovic, Ivan Viola
{"title":"变色龙:多尺度结构生物学模型的动态颜色映射。","authors":"Nicholas Waldin,&nbsp;Mathieu Le Muzic,&nbsp;Manuela Waldner,&nbsp;Eduard Gröller,&nbsp;David Goodsell,&nbsp;Autin Ludovic,&nbsp;Ivan Viola","doi":"10.2312/vcbm.20161266","DOIUrl":null,"url":null,"abstract":"<p><p>Visualization of structural biology data uses color to categorize or separate dense structures into particular semantic units. In multiscale models of viruses or bacteria, there are atoms on the finest level of detail, then amino-acids, secondary structures, macromolecules, up to the compartment level and, in all these levels, elements can be visually distinguished by color. However, currently only single scale coloring schemes are utilized that show information for one particular scale only. We present a novel technology which adaptively, based on the current scale level, adjusts the color scheme to depict or distinguish the currently best visible structural information. We treat the color as a visual resource that is distributed given a particular demand. The changes of the color scheme are seamlessly interpolated between the color scheme from the previous views into a given new one. With such dynamic multi-scale color mapping we ensure that the viewer is able to distinguish structural detail that is shown on any given scale. This technique has been tested by users with an expertise in structural biology and has been overall well received.</p>","PeriodicalId":88872,"journal":{"name":"Eurographics Workshop on Visual Computing for Biomedicine","volume":"2016 ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2016-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5370176/pdf/nihms851574.pdf","citationCount":"13","resultStr":"{\"title\":\"Chameleon: Dynamic Color Mapping for Multi-Scale Structural Biology Models.\",\"authors\":\"Nicholas Waldin,&nbsp;Mathieu Le Muzic,&nbsp;Manuela Waldner,&nbsp;Eduard Gröller,&nbsp;David Goodsell,&nbsp;Autin Ludovic,&nbsp;Ivan Viola\",\"doi\":\"10.2312/vcbm.20161266\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Visualization of structural biology data uses color to categorize or separate dense structures into particular semantic units. In multiscale models of viruses or bacteria, there are atoms on the finest level of detail, then amino-acids, secondary structures, macromolecules, up to the compartment level and, in all these levels, elements can be visually distinguished by color. However, currently only single scale coloring schemes are utilized that show information for one particular scale only. We present a novel technology which adaptively, based on the current scale level, adjusts the color scheme to depict or distinguish the currently best visible structural information. We treat the color as a visual resource that is distributed given a particular demand. The changes of the color scheme are seamlessly interpolated between the color scheme from the previous views into a given new one. With such dynamic multi-scale color mapping we ensure that the viewer is able to distinguish structural detail that is shown on any given scale. This technique has been tested by users with an expertise in structural biology and has been overall well received.</p>\",\"PeriodicalId\":88872,\"journal\":{\"name\":\"Eurographics Workshop on Visual Computing for Biomedicine\",\"volume\":\"2016 \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2016-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5370176/pdf/nihms851574.pdf\",\"citationCount\":\"13\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Eurographics Workshop on Visual Computing for Biomedicine\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.2312/vcbm.20161266\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Eurographics Workshop on Visual Computing for Biomedicine","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2312/vcbm.20161266","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 13

摘要

结构生物学数据的可视化使用颜色将密集结构分类或分离成特定的语义单位。在病毒或细菌的多尺度模型中,有最精细的原子,然后是氨基酸,二级结构,大分子,直到隔室水平,在所有这些水平上,元素都可以通过颜色进行视觉区分。然而,目前只有单一比例的着色方案被利用,只显示一个特定比例的信息。我们提出了一种基于当前尺度的自适应调整配色方案来描绘或区分当前最佳可见结构信息的新技术。我们将颜色视为一种视觉资源,它被分配给特定的需求。配色方案的变化可以无缝地在以前视图的配色方案之间插入到给定的新视图中。有了这种动态的多尺度颜色映射,我们确保观看者能够区分在任何给定的尺度上显示的结构细节。该技术已由具有结构生物学专业知识的用户进行了测试,并且总体上得到了好评。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Chameleon: Dynamic Color Mapping for Multi-Scale Structural Biology Models.

Chameleon: Dynamic Color Mapping for Multi-Scale Structural Biology Models.

Chameleon: Dynamic Color Mapping for Multi-Scale Structural Biology Models.

Visualization of structural biology data uses color to categorize or separate dense structures into particular semantic units. In multiscale models of viruses or bacteria, there are atoms on the finest level of detail, then amino-acids, secondary structures, macromolecules, up to the compartment level and, in all these levels, elements can be visually distinguished by color. However, currently only single scale coloring schemes are utilized that show information for one particular scale only. We present a novel technology which adaptively, based on the current scale level, adjusts the color scheme to depict or distinguish the currently best visible structural information. We treat the color as a visual resource that is distributed given a particular demand. The changes of the color scheme are seamlessly interpolated between the color scheme from the previous views into a given new one. With such dynamic multi-scale color mapping we ensure that the viewer is able to distinguish structural detail that is shown on any given scale. This technique has been tested by users with an expertise in structural biology and has been overall well received.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信