针对埃博拉病毒糖蛋白的硅基疫苗设计

Q2 Biochemistry, Genetics and Molecular Biology
Advances and Applications in Bioinformatics and Chemistry Pub Date : 2017-03-21 eCollection Date: 2017-01-01 DOI:10.2147/AABC.S115859
Raju Dash, Rasel Das, Md Junaid, Md Forhad Chowdhury Akash, Ashekul Islam, Sm Zahid Hosen
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引用次数: 75

摘要

埃博拉病毒(EBOV)是致命病毒之一,迄今已造成24次以上的流行病暴发。尽管已有关于该病毒的分子知识,但尚未开发出用于管理和避免人体内埃博拉病毒感染的明确疫苗或其他补救剂。本研究利用b细胞和t细胞表位预测结合分子对接和分子动力学模拟方法,描述了一种基于表位的EBOV肽疫苗。本研究收集了EBOV所有糖蛋白的蛋白序列,并通过计算机检测方法确定了最具免疫原性的蛋白。从所鉴定的抗原蛋白中,186 ~ 220的肽区和154 ~ 162位的序列HKEGAFFLY被认为是最具潜力的b细胞和t细胞表位。该肽(HKEGAFFLY)与HLA-A*32:15的相互作用具有最高的结合能和稳定性,保护率为83.85%,种群覆盖率最高。结果表明,所设计的抗原表位对EBOV具有强大的持久防御免疫能力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
In silico-based vaccine design against Ebola virus glycoprotein.

Ebola virus (EBOV) is one of the lethal viruses, causing more than 24 epidemic outbreaks to date. Despite having available molecular knowledge of this virus, no definite vaccine or other remedial agents have been developed yet for the management and avoidance of EBOV infections in humans. Disclosing this, the present study described an epitope-based peptide vaccine against EBOV, using a combination of B-cell and T-cell epitope predictions, followed by molecular docking and molecular dynamics simulation approach. Here, protein sequences of all glycoproteins of EBOV were collected and examined via in silico methods to determine the most immunogenic protein. From the identified antigenic protein, the peptide region ranging from 186 to 220 and the sequence HKEGAFFLY from the positions of 154-162 were considered the most potential B-cell and T-cell epitopes, correspondingly. Moreover, this peptide (HKEGAFFLY) interacted with HLA-A*32:15 with the highest binding energy and stability, and also a good conservancy of 83.85% with maximum population coverage. The results imply that the designed epitopes could manifest vigorous enduring defensive immunity against EBOV.

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来源期刊
Advances and Applications in Bioinformatics and Chemistry
Advances and Applications in Bioinformatics and Chemistry Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (miscellaneous)
CiteScore
6.50
自引率
0.00%
发文量
7
审稿时长
16 weeks
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