一个灵活的微阵列数据仿真模型。

Doulaye Dembélé
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引用次数: 33

摘要

微阵列技术允许在基因组水平上监测基因表达谱。这对于寻找与疾病有关的基因是有用的。用于选择感兴趣基因的方法的性能通常是在其他分析(qPCR验证,在数据库中搜索…)之后判断的,这些分析也容易出错。利用已知特征的数据,即合成数据,可以很好地评价基因选择方法。我们提出了一个模型来模拟与当前平台通常产生的数据具有相似特征的微阵列数据。该模型中使用的参数被描述为允许用户生成具有不同特征的数据。为了说明所提模型的灵活性,给出了一个注释示例并进行了说明。一个R包可以立即使用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A Flexible Microarray Data Simulation Model.

A Flexible Microarray Data Simulation Model.

A Flexible Microarray Data Simulation Model.

A Flexible Microarray Data Simulation Model.

Microarray technology allows monitoring of gene expression profiling at the genome level. This is useful in order to search for genes involved in a disease. The performances of the methods used to select interesting genes are most often judged after other analyzes (qPCR validation, search in databases...), which are also subject to error. A good evaluation of gene selection methods is possible with data whose characteristics are known, that is to say, synthetic data. We propose a model to simulate microarray data with similar characteristics to the data commonly produced by current platforms. The parameters used in this model are described to allow the user to generate data with varying characteristics. In order to show the flexibility of the proposed model, a commented example is given and illustrated. An R package is available for immediate use.

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来源期刊
自引率
0.00%
发文量
0
审稿时长
11 weeks
期刊介绍: High-Throughput (formerly Microarrays, ISSN 2076-3905) is a multidisciplinary peer-reviewed scientific journal that provides an advanced forum for the publication of studies reporting high-dimensional approaches and developments in Life Sciences, Chemistry and related fields. Our aim is to encourage scientists to publish their experimental and theoretical results based on high-throughput techniques as well as computational and statistical tools for data analysis and interpretation. The full experimental or methodological details must be provided so that the results can be reproduced. There is no restriction on the length of the papers. High-Throughput invites submissions covering several topics, including, but not limited to: Microarrays, DNA Sequencing, RNA Sequencing, Protein Identification and Quantification, Cell-based Approaches, Omics Technologies, Imaging, Bioinformatics, Computational Biology/Chemistry, Statistics, Integrative Omics, Drug Discovery and Development, Microfluidics, Lab-on-a-chip, Data Mining, Databases, Multiplex Assays.
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