基于贝叶斯网络的阿尔茨海默病异质性多模态生物标志物分析。

EURASIP journal on bioinformatics & systems biology Pub Date : 2016-08-19 eCollection Date: 2016-12-01 DOI:10.1186/s13637-016-0046-9
Yan Jin, Yi Su, Xiao-Hua Zhou, Shuai Huang
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引用次数: 20

摘要

据估计,到2050年,全球阿尔茨海默病(AD)患者的数量将从目前的3600万增加到四倍,而目前还没有经过证实的改善疾病的治疗方法。目前,潜在的疾病机制仍在调查中,最近的研究表明,该疾病涉及多种病因途径。为了更好地了解这种疾病并制定治疗策略,包括阿尔茨海默病神经影像学倡议(ADNI)在内的许多正在进行的研究招募了许多研究参与者,并从各种方式获取了大量生物标志物,包括人口统计学、基因分型、液体生物标志物、神经影像学、神经心理测试和临床评估。然而,目前还缺乏一种能够整合所有收集到的数据的系统方法。我们研究的总体目标是利用机器学习技术来理解不同生物标志物之间的关系,并建立一个系统级模型,以更好地描述生物标志物之间的相互作用,并提供卓越的诊断和预后信息。在这项初步研究中,我们使用贝叶斯网络(BN)分析来自ADNI的多模态数据,包括人口统计学、体积MRI、PET、基因型和神经心理测量,并证明我们的方法具有优越的预测准确性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Heterogeneous multimodal biomarkers analysis for Alzheimer's disease via Bayesian network.

Heterogeneous multimodal biomarkers analysis for Alzheimer's disease via Bayesian network.

Heterogeneous multimodal biomarkers analysis for Alzheimer's disease via Bayesian network.

By 2050, it is estimated that the number of worldwide Alzheimer's disease (AD) patients will quadruple from the current number of 36 million, while no proven disease-modifying treatments are available. At present, the underlying disease mechanisms remain under investigation, and recent studies suggest that the disease involves multiple etiological pathways. To better understand the disease and develop treatment strategies, a number of ongoing studies including the Alzheimer's Disease Neuroimaging Initiative (ADNI) enroll many study participants and acquire a large number of biomarkers from various modalities including demographic, genotyping, fluid biomarkers, neuroimaging, neuropsychometric test, and clinical assessments. However, a systematic approach that can integrate all the collected data is lacking. The overarching goal of our study is to use machine learning techniques to understand the relationships among different biomarkers and to establish a system-level model that can better describe the interactions among biomarkers and provide superior diagnostic and prognostic information. In this pilot study, we use Bayesian network (BN) to analyze multimodal data from ADNI, including demographics, volumetric MRI, PET, genotypes, and neuropsychometric measurements and demonstrate our approach to have superior prediction accuracy.

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