根瘤细菌的进化:共生系统中由基因组重排引起的物种形成过程的重建。

Mikrobiologiia Pub Date : 2016-03-01
N A Provorov, E E Andronov
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引用次数: 0

摘要

基于根瘤菌基因组的深度重排,重构了根瘤菌(rhizobia)在固氮共生系统中的物种形成和宏观进化过程。在根瘤菌进化的第一阶段,自由生活重氮营养菌(与红假单胞菌有关)向共生固氮菌(慢生根瘤菌)的转化是由于获得了固定基因系统,该系统负责为氮酶提供电子和还原等效物,并对植物体内的氮酶合成进行氧依赖性调节,然后获得了负责合成脂壳寡糖nod因子的nod基因。诱导根瘤发育。随后的细菌基因组重排包括:(1)种、属(泛基因组)和单个菌株支持的遗传信息量增加;(2)从单一基因组向多组分基因组过渡;(3)细菌遗传可塑性和水平基因转移水平的提高,导致新属的形成,其中以中根瘤菌、根瘤菌和中根瘤菌最多,超过100种。由Nod因子合成系统的发展和多样化引起的根瘤菌进化可能导致宿主特异性范围的增加(与广谱豆类相互作用的慢生根瘤菌从自养碳代谢转变为共生碳代谢)和其收缩(根瘤菌和中国根瘤菌与galegoid分支的豆类相互作用转变为“利他”)。从共生固氮生物到其自由生活的祖先的进化途径的重建,使基于最新基因组筛选技术的研究成为可能,这些研究旨在解决生物遗传整合到超物种复合体的问题,宏观和微观进化机制的比例,以及基于共生伙伴之间利他关系的合作适应的发展。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
[Evolution of Root Nodule Bacteria: Reconstruction of the Speciation Processes Resulting from Genomic Rearrangements in a Symbiotic System].

The processes of speciation and macroevolution of root nodule bacteria (rhizobia), based on deep rearrangements of their genomes and occurring in the N₂-fixing symbiotic system, are reconstructed. At the first stage of rhizobial evolution, transformation of free-living diazotrophs (related to Rhodopseudomonas) to symbiotic N₂-fixers (Bradyrhizobium) occurred due to the acquisition of the fix gene system, which is responsible for providing nitrogenase with electrons and reducing equivalents, as well as for oxygen-dependent regulation of nitrogenase synthesis in planta, and then of the nod genes responsible for the synthesis of the lipo- chito-oligosaccharide Nod factors, which induce root nodule development. The subsequent rearrangements of bacterial genomes included: (1) increased volume of hereditary information supported by species, genera (pan-genome), and individual strains; (2) transition from the unitary genome to a multicomponent one; and (3) enhanced levels of bacterial genetic plasticity and horizontal gene transfer, resulting in formation of new genera, of which Mesorhizobium, Rhizobium, and Sinorhizobium are the largest, and of over 100 species. Rhizobial evolution caused by development and diversification of the Nod factor synthesizing systems may result in both increased host specificity range (transition of Bradyrhizobium from autotrophic to symbiotrophic carbon metabolism in interaction with a broad spectrum of legumes) and to its contraction (transition of Rhizobium and Sinorhizobium to "altruistic" interaction with legumes of the galegoid clade). Reconstruction of the evolutionary pathway from symbiotic N₂-fixers to their free-living ancestors makes it possible to initiate the studies based on up-to-date genome screening technologies and aimed at the issues of genetic integration of organisms into supracpecies complexes, ratios of the macro- and microevolutionary mechanisms, and developmetn of cooperative adaptations based on altruistic relationship between the symbiotic partners.

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