Julceia Camillo, André P Leão, Alexandre A Alves, Eduardo F Formighieri, Ana Ls Azevedo, Juliana D Nunes, Guy de Capdeville, Jean K de A Mattos, Manoel T Souza
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引用次数: 0
摘要
为了建立一个有关油棕属植物的全面基因组数据库,我们的研究小组正在领导有关非洲油棕(Elaeis guineensis)和美洲油棕(Elaeis oleifera)的几项研发活动,包括对非洲油棕和美洲油棕的全基因组测序。目前对该属植物基因组大小的估计存在争议,因为它们表明美洲油棕基因组约为非洲油棕基因组的一半,而种间杂交种的基因组比亲本物种的基因组都要大。我们估计了三个 E. guineensis 基因型、五个 E. oleifera 基因型和两个种间杂交种基因型的基因组大小。平均而言,E. guineensis 的基因组大小为 4.32 ± 0.173 pg,而 E. oleifera 的基因组大小为 4.43 ± 0.018 pg。此外,我们还发现两个物种的 GC 含量都在 38% 左右。由于我们的研究结果与现有的芒柄蜡棕榈属基因组大小数据相矛盾,因此我们认为芒柄蜡棕榈属物种的实际基因组大小约为 4 pg,美洲油棕的基因组大于非洲油棕。
Reassessment of the Genome Size in Elaeis guineensis and Elaeis oleifera, and Its Interspecific Hybrid.
Aiming at generating a comprehensive genomic database on Elaeis spp., our group is leading several R&D initiatives with Elaeis guineensis (African oil palm) and Elaeis oleifera (American oil palm), including the whole-genome sequencing of the last. Genome size estimates currently available for this genus are controversial, as they indicate that American oil palm genome is about half the size of the African oil palm genome and that the genome of the interspecific hybrid is bigger than both the parental species genomes. We estimated the genome size of three E. guineensis genotypes, five E. oleifera genotypes, and two interspecific hybrids genotypes. On average, the genome size of E. guineensis is 4.32 ± 0.173 pg, while that of E. oleifera is 4.43 ± 0.018 pg. This indicates that both genomes are similar in size, even though E. oleifera is in fact bigger. As expected, the hybrid genome size is around the average of the two genomes, 4.40 ± 0.016 pg. Additionally, we demonstrate that both species present around 38% of GC content. As our results contradict the currently available data on Elaeis spp. genome sizes, we propose that the actual genome size of the Elaeis species is around 4 pg and that American oil palm possesses a larger genome than African oil palm.