S. Alibi , A. Ferjani , O. Gaillot , M. Marzouk , R. Courcol , J. Boukadida
{"title":"应用Api Coryne、maldi - tof质谱和分子方法鉴定临床相关棒状杆菌菌株","authors":"S. Alibi , A. Ferjani , O. Gaillot , M. Marzouk , R. Courcol , J. Boukadida","doi":"10.1016/j.patbio.2015.07.007","DOIUrl":null,"url":null,"abstract":"<div><p>We evaluated the Bruker Biotyper matrix-assisted laser desorption ionization–time of flight (MALDI-TOF) mass spectrometry (MS) for the identification of 97 <em>Corynebacterium</em> clinical in comparison to identification strains by Api Coryne and MALDI-TOF-MS using <em>16S rRNA</em> gene and hypervariable region of <em>rpoB</em> genes sequencing as a reference method. <em>C. striatum</em> was the predominant species isolated followed by <em>C. amycolatum</em>. There was an agreement between Api Coryne strips and MALDI-TOF-MS identification in 88.65% of cases. MALDI-TOF-MS was unable to differentiate <em>C. aurimucosum</em> from <em>C. minutissimum</em> and <em>C. minutissimum</em> from <em>C. singulare</em> but reliably identify 92 of 97 (94.84%) strains. Two strains remained incompletely identified to the species level by MALDI-TOF-MS and molecular approaches. They belonged to <em>Cellulomonas</em> and <em>Pseudoclavibacter</em> genus. In conclusion, MALDI-TOF-MS is a rapid and reliable method for the identification of <em>Corynebacterium</em> species. However, some limits have been noted and have to be resolved by the application of molecular methods.</p></div>","PeriodicalId":19743,"journal":{"name":"Pathologie-biologie","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2015-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.patbio.2015.07.007","citationCount":"38","resultStr":"{\"title\":\"Identification of clinically relevant Corynebacterium strains by Api Coryne, MALDI-TOF-mass spectrometry and molecular approaches\",\"authors\":\"S. Alibi , A. Ferjani , O. Gaillot , M. Marzouk , R. Courcol , J. Boukadida\",\"doi\":\"10.1016/j.patbio.2015.07.007\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>We evaluated the Bruker Biotyper matrix-assisted laser desorption ionization–time of flight (MALDI-TOF) mass spectrometry (MS) for the identification of 97 <em>Corynebacterium</em> clinical in comparison to identification strains by Api Coryne and MALDI-TOF-MS using <em>16S rRNA</em> gene and hypervariable region of <em>rpoB</em> genes sequencing as a reference method. <em>C. striatum</em> was the predominant species isolated followed by <em>C. amycolatum</em>. There was an agreement between Api Coryne strips and MALDI-TOF-MS identification in 88.65% of cases. MALDI-TOF-MS was unable to differentiate <em>C. aurimucosum</em> from <em>C. minutissimum</em> and <em>C. minutissimum</em> from <em>C. singulare</em> but reliably identify 92 of 97 (94.84%) strains. Two strains remained incompletely identified to the species level by MALDI-TOF-MS and molecular approaches. They belonged to <em>Cellulomonas</em> and <em>Pseudoclavibacter</em> genus. In conclusion, MALDI-TOF-MS is a rapid and reliable method for the identification of <em>Corynebacterium</em> species. However, some limits have been noted and have to be resolved by the application of molecular methods.</p></div>\",\"PeriodicalId\":19743,\"journal\":{\"name\":\"Pathologie-biologie\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2015-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1016/j.patbio.2015.07.007\",\"citationCount\":\"38\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Pathologie-biologie\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0369811415000656\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Pathologie-biologie","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0369811415000656","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Identification of clinically relevant Corynebacterium strains by Api Coryne, MALDI-TOF-mass spectrometry and molecular approaches
We evaluated the Bruker Biotyper matrix-assisted laser desorption ionization–time of flight (MALDI-TOF) mass spectrometry (MS) for the identification of 97 Corynebacterium clinical in comparison to identification strains by Api Coryne and MALDI-TOF-MS using 16S rRNA gene and hypervariable region of rpoB genes sequencing as a reference method. C. striatum was the predominant species isolated followed by C. amycolatum. There was an agreement between Api Coryne strips and MALDI-TOF-MS identification in 88.65% of cases. MALDI-TOF-MS was unable to differentiate C. aurimucosum from C. minutissimum and C. minutissimum from C. singulare but reliably identify 92 of 97 (94.84%) strains. Two strains remained incompletely identified to the species level by MALDI-TOF-MS and molecular approaches. They belonged to Cellulomonas and Pseudoclavibacter genus. In conclusion, MALDI-TOF-MS is a rapid and reliable method for the identification of Corynebacterium species. However, some limits have been noted and have to be resolved by the application of molecular methods.