REdiii:用于自动化结构的管道解决方案。

Markus Frederik Bohn, Celia A Schiffer
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引用次数: 3

摘要

高通量晶体学方法需要集成的软件解决方案,以尽量减少手工工作的需要。REdiii是一个系统,通过将现有的晶体学软件集成到一个自适应和部分自治的工作流引擎中,可以实现完全自动化的晶体学结构解决方案。该程序可在收集第一帧衍射数据后启动,无需用户进一步干预即可进行处理、分子置换相位、链示踪、配体拟合和细化。每个软件组件的预设值允许使用高质量数据和已知参数进行有效的进度。自适应工作流引擎可以确定是否需要修改某些参数,并在预配置的解决方案不足时选择替代的软件策略。这种集成的管道旨在提供全面有效的方法来筛选配体结合的共晶结构,同时最大限度地减少重复,并允许高通量的科学发现过程。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

REdiii: a pipeline for automated structure solution.

REdiii: a pipeline for automated structure solution.

REdiii: a pipeline for automated structure solution.

REdiii: a pipeline for automated structure solution.

High-throughput crystallographic approaches require integrated software solutions to minimize the need for manual effort. REdiii is a system that allows fully automated crystallographic structure solution by integrating existing crystallographic software into an adaptive and partly autonomous workflow engine. The program can be initiated after collecting the first frame of diffraction data and is able to perform processing, molecular-replacement phasing, chain tracing, ligand fitting and refinement without further user intervention. Preset values for each software component allow efficient progress with high-quality data and known parameters. The adaptive workflow engine can determine whether some parameters require modifications and choose alternative software strategies in case the preconfigured solution is inadequate. This integrated pipeline is targeted at providing a comprehensive and efficient approach to screening for ligand-bound co-crystal structures while minimizing repetitiveness and allowing a high-throughput scientific discovery process.

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