血卟啉与牛血清白蛋白的结合方式。

IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Mohammed Ahmed, Apurav Guleria, Ajay K Singh, Tusar Bandyopadhyay, Sisir K Sarkar
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引用次数: 0

摘要

蛋白质与小分子的相互作用对于理解包括药物在内的不同治疗剂的递送和转运非常重要。本研究采用紫外可见吸收光谱法和荧光光谱法研究了光敏药物的主要成分血卟啉(HP)与缓冲水溶液中牛血清白蛋白(BSA)的相互作用。分子对接和分子动力学(MD)模拟进一步证实了这一结果。结果表明,牛血清白蛋白的荧光主要被与HP形成的基态配合物猝灭,并伴有电子能量转移(EET)。我们通过实验确定了HP-BSA体系的热力学参数deltaG0、delta0和deltaS0分别为-35.5 kJ摩尔(-1)、-56.4 kJ摩尔(-1)和-0.06 kJ摩尔(-1)K(-1)。这些参数表明氢键和范德华力在络合反应中起主要作用。分子对接计算的结合能参数也支持了这一点。此外,实验确定的deltaG0与分子对接和md模拟确定的deltaG0具有良好的相关性。此外,计算结果清楚地表明,HP与BSA在子结构域IB和IIA中结合。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Deciphering the binding modes of hematoporphyrin to bovine serum albumin.

Interaction of proteins with small molecules is important in understanding delivery and transport of different therapeutic agents, including drugs. In the present study, we investigated the interaction between hematoporphyrin (HP), the principal component of photosensitizing drug with bovine serum albumin (BSA) in aqueous buffer solution using UV-Vis absorption spectroscopy and fluorescence measurements. The results were further substantiated by molecular docking and molecular dynamics (MD) simulation. Our results revealed that fluorescence of BSA was dominantly quenched by the ground-state complex formation with HP accompanied by the electronic energy transfer (EET) to the later. We experimentally determined the thermodynamic parameters such as deltaG0, deltaH0, and deltaS0 for the HP-BSA system which were -35.5 kJ mole(-1), -56.4 kJ mole(-1) and -0.06 kJ mole(-1) K(-1), respectively. These parameters suggested hydrogen-bonding and Van der Waals forces playing major role in the complexation. This was also supported by the binding energy parameters calculated by molecular docking. Moreover, the experimentally determined deltaG0 nicely correlated with those determined by molecular docking and MD-simulation. Further, computational results clearly showed that the binding of HP with BSA in the subdomains IB and IIA.

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来源期刊
Indian journal of biochemistry & biophysics
Indian journal of biochemistry & biophysics 生物-生化与分子生物学
CiteScore
2.90
自引率
50.00%
发文量
88
审稿时长
3 months
期刊介绍: Started in 1964, this journal publishes original research articles in the following areas: structure-function relationships of biomolecules; biomolecular recognition, protein-protein and protein-DNA interactions; gene-cloning, genetic engineering, genome analysis, gene targeting, gene expression, vectors, gene therapy; drug targeting, drug design; molecular basis of genetic diseases; conformational studies, computer simulation, novel DNA structures and their biological implications, protein folding; enzymes structure, catalytic mechanisms, regulation; membrane biochemistry, transport, ion channels, signal transduction, cell-cell communication, glycobiology; receptors, antigen-antibody binding, neurochemistry, ageing, apoptosis, cell cycle control; hormones, growth factors; oncogenes, host-virus interactions, viral assembly and structure; intermediary metabolism, molecular basis of disease processes, vitamins, coenzymes, carrier proteins, toxicology; plant and microbial biochemistry; surface forces, micelles and microemulsions, colloids, electrical phenomena, etc. in biological systems. Solicited peer reviewed articles on contemporary Themes and Methods in Biochemistry and Biophysics form an important feature of IJBB. Review articles on a current topic in the above fields are also considered. They must dwell more on research work done during the last couple of years in the field and authors should integrate their own work with that of others with acumen and authenticity, mere compilation of references by a third party is discouraged. While IJBB strongly promotes innovative novel research works for publication as full length papers, it also considers research data emanating from limited objectives, and extension of ongoing experimental works as ‘Notes’. IJBB follows “Double Blind Review process” where author names, affiliations and other correspondence details are removed to ensure fare evaluation. At the same time, reviewer names are not disclosed to authors.
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