六巴石斑鱼(石斑鱼目:石斑鱼科)线粒体全基因组的研究。

Mitochondrial Dna Pub Date : 2015-06-01 Epub Date: 2013-09-11 DOI:10.3109/19401736.2013.823175

Fei-Yan Du, Le Ye, Xue-Hui Wang

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引用次数: 3

摘要

本文报道了六巴石斑鱼(Epinephelus sexfasciatus)的完整有丝分裂基因组。sexfasciatus有丝分裂全基因组全长16786 bp，具有脊椎动物中典型的线粒体基因序列和组成。总碱基组成为28.40% A、27.93% C、27.21% T和16.45% g。COI基因以GTG为起始密码子，ATP6基因以CTG为起始密码子。tRNA-Ser2失去了二氢吡啶臂，取而代之的是一个简单的环。最大似然(ML)和贝叶斯推断(BI)方法均使用石斑鱼属的有丝分裂基因组获得相同的树拓扑结构。sexfasciatus与E. akaara嵌套。蹼纹伊蚊和筋膜伊蚊，再与棘伊蚊合并形成一个分支。

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Complete mitochondrial genome of the sixbar grouper Epinephelus sexfasciatus (Perciformes: Epinephelidae).

In this study, we presented the complete mitogenome for the sixbar grouper Epinephelus sexfasciatus. The complete mitogenome of E. sexfasciatus is 16,786 bp in length with the typical mitochondrial gene order and composition in vertebrates. Overall base composition was 28.40% A, 27.93% C, 27.21% T and 16.45% G. The COI gene used GTG and the ATP6 gene used CTG as the start codon. The tRNA-Ser2 lost the dihydrouridine arm and replaced with a simple loop. Both the maximum likelihood (ML) and Bayesian inference (BI) methods yielded the same tree topology using available mitogenomes of the genus Epinephelus. Epinephelus sexfasciatus was nested to E. akaara. E. awoara and E. fasciatomaculosus, and then combined with E. stictus formed a clade.

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来源期刊

Mitochondrial Dna 生物-遗传学

自引率

0.00%

发文量

审稿时长

2.4 months

期刊介绍： Previously published under the title DNA Sequence (Vols 1-19.3), Mitochondrial DNA accepts original high-quality reports based on mapping, sequencing and analysis of mitochondrial DNA and RNA. Descriptive papers on DNA sequences from mitochondrial genomes, and also analytical papers in the areas of population genetics, medical genetics, phylogenetics and human evolution that use mitochondrial DNA as a source of evidence for studies will be considered for publication. The editorial board will also consider manuscripts that examine population genetic and systematic theory that specifically address the use of mitochondrial DNA sequences.