布尔网络的谐波分析:决定力和摄动。

Reinhard Heckel, Steffen Schober, Martin Bossert
{"title":"布尔网络的谐波分析:决定力和摄动。","authors":"Reinhard Heckel,&nbsp;Steffen Schober,&nbsp;Martin Bossert","doi":"10.1186/1687-4153-2013-6","DOIUrl":null,"url":null,"abstract":"<p><p>: Consider a large Boolean network with a feed forward structure. Given a probability distribution on the inputs, can one find, possibly small, collections of input nodes that determine the states of most other nodes in the network? To answer this question, a notion that quantifies the determinative power of an input over the states of the nodes in the network is needed. We argue that the mutual information (MI) between a given subset of the inputs X={X1,...,Xn} of some node i and its associated function fi(X) quantifies the determinative power of this set of inputs over node i. We compare the determinative power of a set of inputs to the sensitivity to perturbations to these inputs, and find that, maybe surprisingly, an input that has large sensitivity to perturbations does not necessarily have large determinative power. However, for unate functions, which play an important role in genetic regulatory networks, we find a direct relation between MI and sensitivity to perturbations. As an application of our results, we analyze the large-scale regulatory network of Escherichia coli. We identify the most determinative nodes and show that a small subset of those reduces the overall uncertainty of the network state significantly. Furthermore, the network is found to be tolerant to perturbations of its inputs. </p>","PeriodicalId":72957,"journal":{"name":"EURASIP journal on bioinformatics & systems biology","volume":"2013 1","pages":"6"},"PeriodicalIF":0.0000,"publicationDate":"2013-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1687-4153-2013-6","citationCount":"17","resultStr":"{\"title\":\"Harmonic analysis of Boolean networks: determinative power and perturbations.\",\"authors\":\"Reinhard Heckel,&nbsp;Steffen Schober,&nbsp;Martin Bossert\",\"doi\":\"10.1186/1687-4153-2013-6\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>: Consider a large Boolean network with a feed forward structure. Given a probability distribution on the inputs, can one find, possibly small, collections of input nodes that determine the states of most other nodes in the network? To answer this question, a notion that quantifies the determinative power of an input over the states of the nodes in the network is needed. We argue that the mutual information (MI) between a given subset of the inputs X={X1,...,Xn} of some node i and its associated function fi(X) quantifies the determinative power of this set of inputs over node i. We compare the determinative power of a set of inputs to the sensitivity to perturbations to these inputs, and find that, maybe surprisingly, an input that has large sensitivity to perturbations does not necessarily have large determinative power. However, for unate functions, which play an important role in genetic regulatory networks, we find a direct relation between MI and sensitivity to perturbations. As an application of our results, we analyze the large-scale regulatory network of Escherichia coli. We identify the most determinative nodes and show that a small subset of those reduces the overall uncertainty of the network state significantly. Furthermore, the network is found to be tolerant to perturbations of its inputs. </p>\",\"PeriodicalId\":72957,\"journal\":{\"name\":\"EURASIP journal on bioinformatics & systems biology\",\"volume\":\"2013 1\",\"pages\":\"6\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2013-05-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1186/1687-4153-2013-6\",\"citationCount\":\"17\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"EURASIP journal on bioinformatics & systems biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/1687-4153-2013-6\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"EURASIP journal on bioinformatics & systems biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/1687-4153-2013-6","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 17

摘要

考虑一个具有前馈结构的大型布尔网络。给定输入的概率分布,是否可以找到(可能是很小的)决定网络中大多数其他节点状态的输入节点集合?要回答这个问题,需要一个量化输入对网络中节点状态的决定性力量的概念。我们认为给定输入子集X={X1,…,某些节点i的Xn}及其相关函数fi(X)量化了节点i上这组输入的决定力。我们将一组输入的决定力与这些输入对扰动的敏感性进行比较,并发现,可能令人惊讶的是,对扰动具有大敏感性的输入不一定具有大的决定力。然而,对于在遗传调控网络中起重要作用的单分子功能,我们发现MI与对扰动的敏感性之间存在直接关系。作为我们研究结果的应用,我们分析了大肠杆菌的大规模调控网络。我们确定了最具决定性的节点,并表明其中的一小部分显著降低了网络状态的整体不确定性。此外,发现网络对其输入的扰动具有容忍度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Harmonic analysis of Boolean networks: determinative power and perturbations.

Harmonic analysis of Boolean networks: determinative power and perturbations.

Harmonic analysis of Boolean networks: determinative power and perturbations.

Harmonic analysis of Boolean networks: determinative power and perturbations.

: Consider a large Boolean network with a feed forward structure. Given a probability distribution on the inputs, can one find, possibly small, collections of input nodes that determine the states of most other nodes in the network? To answer this question, a notion that quantifies the determinative power of an input over the states of the nodes in the network is needed. We argue that the mutual information (MI) between a given subset of the inputs X={X1,...,Xn} of some node i and its associated function fi(X) quantifies the determinative power of this set of inputs over node i. We compare the determinative power of a set of inputs to the sensitivity to perturbations to these inputs, and find that, maybe surprisingly, an input that has large sensitivity to perturbations does not necessarily have large determinative power. However, for unate functions, which play an important role in genetic regulatory networks, we find a direct relation between MI and sensitivity to perturbations. As an application of our results, we analyze the large-scale regulatory network of Escherichia coli. We identify the most determinative nodes and show that a small subset of those reduces the overall uncertainty of the network state significantly. Furthermore, the network is found to be tolerant to perturbations of its inputs.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信