{"title":"从最小衍射强度得到的一维晶体结构的枚举。","authors":"Ahmed Al-Asadi, Eugene Chudin, Oleg V Tsodikov","doi":"10.1107/S0108767312002231","DOIUrl":null,"url":null,"abstract":"<p><p>A central problem in crystallography is crystal structure determination directly from diffraction intensities. For structures of small molecules, this problem has been addressed by probabilistic direct methods that allow one to obtain the structure coordinates with a high degree of certainty given a sufficiently large set of intensities. In contrast, deterministic algebraic methods that could guarantee a solution and may be applicable to macromolecules have not yet emerged. In this study a basic algebraic question is posed: how many crystal structures can be obtained from a given set of intensities? Recently, by using a new origin definition and the method of elementary symmetrical polynomials, all small (N ≤ 4 atoms) one-dimensional crystal structures that could be obtained from the minimum set of N - 1 lowest-resolution intensities were enumerated. Here, by using methods of modern algebraic geometry the maximum number of one-dimensional crystal structures that can be determined from the minimum set of intensities for N > 4 is obtained. It is demonstrated that this ambiguity increases exponentially with the increasing number of atoms in the structure N (~4(N)/N(3/2) for N >> 1) and includes non-homometric structures. Therefore, a minimum set of intensities, even in principle, is insufficient for structure determination for all but very small structures.</p>","PeriodicalId":7400,"journal":{"name":"Acta Crystallographica Section A","volume":"68 Pt 3","pages":"313-8"},"PeriodicalIF":1.8000,"publicationDate":"2012-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108767312002231","citationCount":"2","resultStr":"{\"title\":\"Enumeration of one-dimensional crystal structures obtained from a minimum of diffraction intensities.\",\"authors\":\"Ahmed Al-Asadi, Eugene Chudin, Oleg V Tsodikov\",\"doi\":\"10.1107/S0108767312002231\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A central problem in crystallography is crystal structure determination directly from diffraction intensities. For structures of small molecules, this problem has been addressed by probabilistic direct methods that allow one to obtain the structure coordinates with a high degree of certainty given a sufficiently large set of intensities. In contrast, deterministic algebraic methods that could guarantee a solution and may be applicable to macromolecules have not yet emerged. In this study a basic algebraic question is posed: how many crystal structures can be obtained from a given set of intensities? Recently, by using a new origin definition and the method of elementary symmetrical polynomials, all small (N ≤ 4 atoms) one-dimensional crystal structures that could be obtained from the minimum set of N - 1 lowest-resolution intensities were enumerated. Here, by using methods of modern algebraic geometry the maximum number of one-dimensional crystal structures that can be determined from the minimum set of intensities for N > 4 is obtained. It is demonstrated that this ambiguity increases exponentially with the increasing number of atoms in the structure N (~4(N)/N(3/2) for N >> 1) and includes non-homometric structures. Therefore, a minimum set of intensities, even in principle, is insufficient for structure determination for all but very small structures.</p>\",\"PeriodicalId\":7400,\"journal\":{\"name\":\"Acta Crystallographica Section A\",\"volume\":\"68 Pt 3\",\"pages\":\"313-8\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2012-05-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1107/S0108767312002231\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Acta Crystallographica Section A\",\"FirstCategoryId\":\"88\",\"ListUrlMain\":\"https://doi.org/10.1107/S0108767312002231\",\"RegionNum\":4,\"RegionCategory\":\"材料科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2012/3/6 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Crystallographica Section A","FirstCategoryId":"88","ListUrlMain":"https://doi.org/10.1107/S0108767312002231","RegionNum":4,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2012/3/6 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
Enumeration of one-dimensional crystal structures obtained from a minimum of diffraction intensities.
A central problem in crystallography is crystal structure determination directly from diffraction intensities. For structures of small molecules, this problem has been addressed by probabilistic direct methods that allow one to obtain the structure coordinates with a high degree of certainty given a sufficiently large set of intensities. In contrast, deterministic algebraic methods that could guarantee a solution and may be applicable to macromolecules have not yet emerged. In this study a basic algebraic question is posed: how many crystal structures can be obtained from a given set of intensities? Recently, by using a new origin definition and the method of elementary symmetrical polynomials, all small (N ≤ 4 atoms) one-dimensional crystal structures that could be obtained from the minimum set of N - 1 lowest-resolution intensities were enumerated. Here, by using methods of modern algebraic geometry the maximum number of one-dimensional crystal structures that can be determined from the minimum set of intensities for N > 4 is obtained. It is demonstrated that this ambiguity increases exponentially with the increasing number of atoms in the structure N (~4(N)/N(3/2) for N >> 1) and includes non-homometric structures. Therefore, a minimum set of intensities, even in principle, is insufficient for structure determination for all but very small structures.
期刊介绍:
Acta Crystallographica Section A: Foundations and Advances publishes articles reporting advances in the theory and practice of all areas of crystallography in the broadest sense. As well as traditional crystallography, this includes nanocrystals, metacrystals, amorphous materials, quasicrystals, synchrotron and XFEL studies, coherent scattering, diffraction imaging, time-resolved studies and the structure of strain and defects in materials.
The journal has two parts, a rapid-publication Advances section and the traditional Foundations section. Articles for the Advances section are of particularly high value and impact. They receive expedited treatment and may be highlighted by an accompanying scientific commentary article and a press release. Further details are given in the November 2013 Editorial.
The central themes of the journal are, on the one hand, experimental and theoretical studies of the properties and arrangements of atoms, ions and molecules in condensed matter, periodic, quasiperiodic or amorphous, ideal or real, and, on the other, the theoretical and experimental aspects of the various methods to determine these properties and arrangements.