Mikhail Prokopenko, Daniel Polani, Matthew Chadwick
{"title":"污名基因转移与通用编码的出现。","authors":"Mikhail Prokopenko, Daniel Polani, Matthew Chadwick","doi":"10.2976/1.3175813","DOIUrl":null,"url":null,"abstract":"<p><p>We consider a simple information-theoretic model for evolutionary dynamics approaching the \"coding threshold,\" where the capacity to symbolically represent nucleic acid sequences emerges in response to a change in environmental conditions. We study the conditions when a coupling between the dynamics of a \"proto-cell\" and its proto-symbolic representation becomes beneficial in terms of preserving the proto-cell's information in a noisy environment. In particular, we are interested in understanding the behavior at the \"error threshold\" level, which, in our case, turns out to be a whole \"error interval.\" The useful coupling is accompanied by self-organization of internal processing, i.e., an increase in complexity within the evolving system. Second, we study whether and how different proto-cells can stigmergically share such information via a joint encoding, even if they have slightly different individual dynamics. Implications for the emergence of biological genetic code are discussed.</p>","PeriodicalId":55056,"journal":{"name":"Hfsp Journal","volume":"3 5","pages":"317-27"},"PeriodicalIF":0.0000,"publicationDate":"2009-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2976/1.3175813","citationCount":"7","resultStr":"{\"title\":\"Stigmergic gene transfer and emergence of universal coding.\",\"authors\":\"Mikhail Prokopenko, Daniel Polani, Matthew Chadwick\",\"doi\":\"10.2976/1.3175813\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We consider a simple information-theoretic model for evolutionary dynamics approaching the \\\"coding threshold,\\\" where the capacity to symbolically represent nucleic acid sequences emerges in response to a change in environmental conditions. We study the conditions when a coupling between the dynamics of a \\\"proto-cell\\\" and its proto-symbolic representation becomes beneficial in terms of preserving the proto-cell's information in a noisy environment. In particular, we are interested in understanding the behavior at the \\\"error threshold\\\" level, which, in our case, turns out to be a whole \\\"error interval.\\\" The useful coupling is accompanied by self-organization of internal processing, i.e., an increase in complexity within the evolving system. Second, we study whether and how different proto-cells can stigmergically share such information via a joint encoding, even if they have slightly different individual dynamics. Implications for the emergence of biological genetic code are discussed.</p>\",\"PeriodicalId\":55056,\"journal\":{\"name\":\"Hfsp Journal\",\"volume\":\"3 5\",\"pages\":\"317-27\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2009-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.2976/1.3175813\",\"citationCount\":\"7\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Hfsp Journal\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.2976/1.3175813\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2009/8/6 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Hfsp Journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2976/1.3175813","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2009/8/6 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
Stigmergic gene transfer and emergence of universal coding.
We consider a simple information-theoretic model for evolutionary dynamics approaching the "coding threshold," where the capacity to symbolically represent nucleic acid sequences emerges in response to a change in environmental conditions. We study the conditions when a coupling between the dynamics of a "proto-cell" and its proto-symbolic representation becomes beneficial in terms of preserving the proto-cell's information in a noisy environment. In particular, we are interested in understanding the behavior at the "error threshold" level, which, in our case, turns out to be a whole "error interval." The useful coupling is accompanied by self-organization of internal processing, i.e., an increase in complexity within the evolving system. Second, we study whether and how different proto-cells can stigmergically share such information via a joint encoding, even if they have slightly different individual dynamics. Implications for the emergence of biological genetic code are discussed.