时序微阵列数据的贝叶斯函数数据聚类。

Ping Ma, Wenxuan Zhong, Yang Feng, Jun S Liu
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引用次数: 9

摘要

我们提出了一种基于混合效应平滑样条模型的贝叶斯聚类方法来聚类时间基因表达微阵列谱,并设计了一个吉布斯采样器来从期望的后验分布中采样。该方法可以根据贝叶斯信息准则自动确定聚类数,并且易于处理缺失数据。当应用于芽殖酵母的微阵列数据集时,我们的聚类算法根据功能富集分析提供具有生物学意义的基因簇。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bayesian functional data clustering for temporal microarray data.

We propose a Bayesian procedure to cluster temporal gene expression microarray profiles, based on a mixed-effect smoothing-spline model, and design a Gibbs sampler to sample from the desired posterior distribution. Our method can determine the cluster number automatically based on the Bayesian information criterion, and handle missing data easily. When applied to a microarray dataset on the budding yeast, our clustering algorithm provides biologically meaningful gene clusters according to a functional enrichment analysis.

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